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Exploring amyloid aggregates with coarse-grained protein simulations

Published online by Cambridge University Press:  05 April 2013

Philippe Derreumaux
Philippe Derreumaux*
Affiliation:
Laboratoire de Biochimie Théorique, UPR 9080 CNRS, Université Paris Diderot, Sorbonne Paris Cité, IBPC, 13 rue Pierre et Marie Curie, 75005, Paris, France Institut Universitaire de France, 103 Boulevard Saint-Michel, 75005, Paris.
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Abstract

Proteins are complex, yet elegant, machines fine-tuned by evolution to properly fulfill a variety of tasks in the crowded cellular environment. These are, however, very challenging numerically due to their dimension, number of degrees of freedom and the wide range of relevant time scales. With aging, some proteins misfold and form harmful amyloid aggregates associated with multiple neurodegenerative diseases, and in particular Alzheimer’s, which challenge our society today. Here, I present the coarse-grained OPEP (Optimized Potential for Efficient peptide structure Prediction) force field and what we can learn from OPEP simulations to get insights into the self-assembly of amyloid peptides.

Keywords

simulationbiologicalphse transformation
Type
Articles
Information
MRS Online Proceedings Library (OPL) , Volume 1535: Symposium a – Proceedings of the Multiscale Materials Modeling 2012 Conference , 2013 , mmm2012-a-0342
Copyright
Copyright © Materials Research Society 2013 

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