Hostname: page-component-78c5997874-g7gxr Total loading time: 0 Render date: 2024-11-10T09:28:00.238Z Has data issue: false hasContentIssue false
  • English
  • Français

Genetic diversity and population structure in a collection of roselle (Hibiscus sabdariffa L.) from Niger

Published online by Cambridge University Press:  12 November 2013

Y. Bakasso ,
M. Zaman-Allah ,
C. Mariac ,
C. Billot ,
Y. Vigouroux ,
J. D. Zongo  and
M. Saadou
Y. Bakasso
Affiliation:
Université Abdou Moumouni de Niamey, Niamey, Niger
M. Zaman-Allah*
Affiliation:
Université de Maradi, Maradi, Niger
C. Mariac
Affiliation:
Institut de Recherche pour le Développement, Montpellier, France Université Montpellier II, Montpellier, France
C. Billot
Affiliation:
CIRAD, UMR AGAP, F-34398, Montpellier, France
Y. Vigouroux
Affiliation:
Institut de Recherche pour le Développement, Montpellier, France Université Montpellier II, Montpellier, France
J. D. Zongo
Affiliation:
Université de Ouagadougou, Ouagadougou, Burkina Faso
M. Saadou
Affiliation:
Université Abdou Moumouni de Niamey, Niamey, Niger
*
* Corresponding author: E-mail: bakasso@yahoo.com
Get access Rights & Permissions [Opens in a new window]

Abstract

Roselle (Hibiscus sabdariffa L.) is an economically important plant in Niger. Little is known about its genetic diversity and population structure. In this study, we performed the first diversity assessment of a collection of 124 roselle accessions and 16 accessions of its close relatives Hibiscuscannabinus and Abelmoschusesculentus. Our study was based on ten agromorphological traits and 267 amplified fragment length polymorphism markers. We identified two major distinct groups in H. sabdariffa using a Bayesian method. These two genetic groups were associated with statistical differences for three phenological characteristics: number of days to flowering, 100-seed weight and calyx size. However, the calyx colour, i.e. a morphological characteristic often used to classify different local ecotypes, did not superimpose this separation. Our findings suggested that roselle diversity is genetically structured; the two different groups were clearly associated with morphological differences but were not commonly used by farmers for their classification. The impact of the perceived ecotype structure and its consequence on farmer management is discussed.

Keywords

AFLPgenetic diversityHibiscus sabdariffa Lpopulation structure
Type
Research Article
Information
Plant Genetic Resources , Volume 12 , Issue 2 , August 2014 , pp. 207 - 214
Copyright
Copyright © NIAB 2013 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Allinne, C, Mariac, C, Vigouroux, Y, Bezançon, G, Couturon, E, Moussa, D, Tidjani, M, Pham, JL and Robert, T (2008) Role of seed flow on the pattern and dynamics of pearl millet (Pennisetum glaucum [L.] R. Br.) genetic diversity assessed by AFLP markers: a study in south-western Niger. Genetica 133: 167–178.CrossRefGoogle ScholarPubMed
Atta, S, Sarr, B, Diallo, AB, Bakasso, Y, Lona, I and Saadou, M (2013) Nutrients composition of calyces and seeds of three Roselle (Hibiscus sabdariffa L.) ecotypes from Niger. African Journal of Biotechnology 12: 4174–4178.Google Scholar
Bakasso, Y, Saadou, M, Zongo, J-D, Baidou Forson, J and Toujani, A (2009) Preliminary assessment of the influence of environment on growth parameters and yield in some genotypes of Hibiscus sabdariffa L. from Niger. International Journal of Biological and Chemical Sciences 3: 1133–1140.Google Scholar
Braglia, L, Bruna, S, Lanteri, S, Mercuri, A and Portis, E (2010) An AFLP-based assessment of the genetic diversity within Hibiscus rosa-sinensis and its place within the Hibiscus genus complex. Scientia Horticulturae 123: 372–378.Google Scholar
Bricage, P (1978) Le Bissap, Hibiscus sabdariffa, Malvacées. Aspects biologiques. Bulletin AASNS 64: 9–23.Google Scholar
DSA (Division de la statistique agricole) (2013) Résultats Définitifs des Campagnes Agricoles synthèse nationale du Ministère de l'Agriculture du Niger . Office National d'Edition et de Presse, Niamey, Niger.Google Scholar
Ehrich, D (2006) AFLPDAT: a collection of R functions for convenient handling of AFLP data. Molecular Ecology Notes 6: 603–604.CrossRefGoogle Scholar
Evanno, G, Regnaut, S and Goudet, J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611–2620.Google Scholar
Falush, D, Stephens, M and Pritchard, JK (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567–1587.Google Scholar
Faraji, MH and Tarkhani, AH (1999) The effect of sour tea (Hibiscus sabdariffa) on essential hypertension. Journal Ethnopharmacol 65: 231–236.CrossRefGoogle Scholar
Mariac, C, Luong, V, Kapran, I, Mamadou, A, Sagnard, F, Deu, M, Chantereau, J, Gerard, B, Ndjeunga, J, Bezançon, G, Pham, JL and Vigouroux, Y (2006) Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers. Theoretical and Applied Genetics 114: 49–58.Google Scholar
Mckey, D, Emperaire, L, Elias, M, Pinton, F, Robert, T, Desmouliere, S and Rival, L (2001) Gestions locales et dynamiques régionales de la diversité variétale du manioc en Amazonie. Genetics Selection Evolution 33: 465–490.Google Scholar
Morton, JF (1987) Roselle. In: Morton, JF (ed.) Fruits of Warm Climates. Greensboro, NC: Media, Inc., pp. 281–286.Google Scholar
Onyenekwe, PC, Ajani, EO, Ameh, DA and Gamaniel, KS (1999) Antihypertensive effects of roselle (Hibiscus sabdariffa) calyx infusion in spontaneously hypertensive rats and a comparison of its toxicity with that in Wistar rats. Cell Biochemistry and Function 17: 199–206.Google Scholar
Perrier, X, Flori, A and Bonnot, F (2003) Data analysis methods. In: Hamon, P, Seguin, M, Perrier, X and Glaszmann, JC (eds) Genetic Diversity of Cultivated Tropical Plants. Science Publishers, Enfield, Montpellier, pp. 43–76.Google Scholar
Perry, LM (1980) Medicinal Plants of East and Southeast Asia. Cambridge, MA: MIT Press, p. 620.Google Scholar
Pinton, F and Emperaire, L (2001) Le manioc en Amazonie brésilienne: diversité variétale et marché. Genetics Selection Evolution 33: 491–512.Google Scholar
Powell, W, Morgante, M, Andre, C, Hanafey, M, Vogel, J, Tingey, S and Rafalski, A (1996) The comparison of RFLP, RAPD, AFLP, and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding 2: 225–238.Google Scholar
Pritchard, JK, Stephens, M and Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945–959.Google Scholar
Rhodin, EG and Panchoo, L (1990) Effect of transplant timing and terminal bud removal on Sorrel. Caribbean Food Crop Society Proceedings 26: 245–254.Google Scholar
Salah, AM, Gathumbi, J and Vierling, W (2002) Inhibition of intestinal motility by methanol extracts of Hibiscus sabdariffa L. (Malvaceae) in rats. Phytotherapy Research 16: 283–285.CrossRefGoogle ScholarPubMed
Satya, P, Karan, M, Kar, CS, Mahapatra, AK and Mahapatra, BS (2013) Assessment of molecular diversity and evolutionary relationship of kenaf (Hibiscus cannabinus L.), roselle (H. sabdariffa L.) and their wild relatives. Plant Systematics and Evolution 299: 619–629.CrossRefGoogle Scholar
Schippers, RR (2000) African Indigenous Vegetables: An Overview of the Cultivated Species. National Resources Institute/ACP-EU Technical Centre of Agricultural and Rural Cooperation, Chatham, United Kingdom. 214 pp..Google Scholar
Torres-Moran, MI, Escoto-Delgadillo, M, Ron-Parra, J, Parra-Tovar, G, Mena-Munguia, S, Rodriguez-Garcia, A, Rodriguez-Sahagun, A and Castellanos-Hernandez, O (2011) Relationships among twelve genotypes of roselle (Hibiscus sabdariffa L.) cultivated in western Mexico. Industrial Crops and Products 34: 1079–1083.CrossRefGoogle Scholar
Tounkara, F, Amadou, I, Guo-Wei, Le and Yong-hui, Shi (2011) Effect of boiling on the physicochemical properties of Roselle seeds (Hibiscus sabdariffa L.) cultivated in Mali. African Journal of Biotechnology 10: 18160–18166.Google Scholar
Tseng, TH, Kao, ES, Chou, CY, Chou, FP, Lin Wu, HW and Wang, CJ (1997) Protective effect of dried flower extracts of Hibiscus sabdariffa L. against oxidative stress in rat primary hepatocytes. Food and Chemical Toxicology 35: 1159–1164.Google Scholar
Watt, JM and Breyer-Brandwijk, MG (1962) The medicinal and poisonous plants of southern and eastern Africa. E. & S. Livingstone Ltd., Edinburg and London, Second edition, 1457 p.Google Scholar
Zhou, C, Bao-Rong, L, Brian, SB, Kazuhiko, S and Jia-Kuan, C (2002) Comparative studies of genetic diversity in kenaf (Hibiscus cannabinus L.) varieties based on analysis of agronomic and RAPD data. Hereditas 136: 231–239.Google Scholar
Zhou, C, Bao-Rong, L, Kazuhiko, S, Da-Xu, F and Jia-Kuan, C (2004) Identification and genetic relationships of kenaf (Hibiscus cannabinus L.) germplasm revealed by AFLP analysis. Genetic Resources and Crop Evolution 51: 393–401.Google Scholar
Supplementary material: File

Bakasso et al. Supplementary Material

Tables and Figures

Download Bakasso et al. Supplementary Material(File)
File 627.2 KB