Hostname: page-component-78c5997874-t5tsf Total loading time: 0 Render date: 2024-11-10T13:26:10.009Z Has data issue: false hasContentIssue false
  • English
  • Français

Preliminary study on geographical distribution and evolutionary relationships between cultivated and wild adzuki bean (Vigna angularis var. angularis and var. nipponensis) by AFLP analysis

Published online by Cambridge University Press:  27 June 2007

Zong Xu-xiao ,
Duncan Vaughan ,
Norihiko Tomooka ,
Akito Kaga ,
Wang Xin-wang ,
Guan Jian-ping  and
Wang Shu-min
Zong Xu-xiao*
Affiliation:
Institute of Crop Germplasm Resources, Chinese Academy of Agricultural Sciences, Beijing, 100081, P.R. China
Duncan Vaughan
Affiliation:
National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
Norihiko Tomooka
Affiliation:
National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
Akito Kaga
Affiliation:
National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
Wang Xin-wang
Affiliation:
National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
Guan Jian-ping
Affiliation:
Institute of Crop Germplasm Resources, Chinese Academy of Agricultural Sciences, Beijing, 100081, P.R. China
Wang Shu-min
Affiliation:
Institute of Crop Germplasm Resources, Chinese Academy of Agricultural Sciences, Beijing, 100081, P.R. China
*
*Corresponding author. E-mail: ongxx@mail.caas.net.cn
Get access Rights & Permissions [Opens in a new window]

Abstract

A set of 146 representative adzuki (Vigna angularis var. angularis and var. nipponensis) germplasm from six Asian countries with a tradition of adzuki bean production, together with an outgroup standard rice bean (Vigna umbellata), were analysed by amplified fragment length polymorphism (AFLP) methodology using 12 informative primer pairs. A total of 313 unambiguous polymorphic bands were created. According to the dendrogram, using cluster analysis based on AFLP banding, 143 of the accessions were distinct and revealed enough genetic diversity for identification and classification of accessions within Vigna angularis. A neighbour-joining tree was generated using the newly developed Innan's nucleotide diversity estimate from the AFLP data. From analysis, seven distinct evolutionary groups, named ‘Chinese cultivated’, ‘Japanese cultivated’, ‘Japanese complex-Korean cultivated’, ‘Chinese wild’, ‘China Taiwan wild’, ‘Nepal- Bhutan cultivated’ and ‘Himalayan wild’, were detected. Nucleotide diversity with geographical distribution of each group is discussed, regarding the evolutionary relationships between wild and cultivated adzuki beans. The preliminary results indicated that cultivated adzuki beans have been domesticated from at least four progenitors with at least three geographical origins.

Keywords

adzuki beanAFLPevolutionary relationshipsgenetic diversitygeographical distributionVigna angularis
Type
Research Article
Information
Plant Genetic Resources , Volume 1 , Issue 2-3 , August 2003 , pp. 175 - 183
Copyright
Copyright © NIAB 2003

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Dellaporta, SL, Wood, J and Hicks, JB (1983) A plant DNA minipreparation: version II. Plant Molecular Biology Reports 1: 19–21.CrossRefGoogle Scholar
Ding, ZL (1959) Legume Crops. Beijing: Graduate Education Press (in Chinese).Google Scholar
Dong, YC (trans.) (1982) Evolutionary Centers of Major Cultivated Plants in the World. Beijing: China Agriculture Press (in Chinese).Google Scholar
Felsenstein, J (1992) Phylogenies from restriction sites, a maximum likelihood approach. Evolution 46, 557–574.Google Scholar
Hu, JP (1984) Preliminary study on adzuki bean germplasm resources. Crop Germplasm Resources 1: 21–25(in Chinese).Google Scholar
Innan, H, Terauchi, R, Kahl, G and Tajima, F (1999) A method for estimating nucleotide diversity from AFLP data. Genetics 151: 1157–1164.CrossRefGoogle ScholarPubMed
Jaccard, P (1908) Nouvelles recherches sur la distribution florale. Bulletin Societe Vaudoise Sciences Naturelles 44: 223–270.Google Scholar
Jiang, YG (1984) Study on ecological types of Shandong local adzuki germplasm. Crop Germplasm Resources 4: 9–12 (in Chinese).Google Scholar
Gene, Key (1994) AFLP Protocol for Public Release, Version 2.1.Google Scholar
Mimura, M, Yasuda, K and Yamaguchi, H (2000) RAPD variation in wild, weedy and cultivated azuki beans in Asia. Genetic Resources and Crop Evolution 47: 603–610.CrossRefGoogle Scholar
Rohlf, JF (2000) NTSYSpc: Numerical Taxonomy and Multivariate Analysis System, Version 2.1. Users Guide. Setauket, NY: Exeter Software.Google Scholar
Tomooka, N, Egawa, Y and Kaga, A (2000) Biosystematics and genetic resources of the genus Vigna subgenus Ceratotropis. In: 7th MAFF International Workshop on Genetic Resources. Wild Legumes, pp. 37–62.Google Scholar
Tomooka, N, Vaughan, DA, Moss, H and Maxted, N (2003) The Asian Vigna. The Genus Vigna Subgenus Ceratotropis Genetic Resources. Dordrecht: Kluwer Academic Press.Google Scholar
Wang, SM, Hu, YK and Hu, JP (2002) Study on genetic diversity of adzuki bean [Vigna angularis (Willd.) Ohwi & Ohashi] germplasm based on RAPD markers. Journal of Plant Genetic Resources 3(1): 14–19 (in Chinese).Google Scholar
Xu, RQ, Tomooka, N and Vaughan, DA (2000) AFLP markers for characterizing the azuki bean complex. Crop Science 40: 808–815.CrossRefGoogle Scholar
Yee, E, Kidwell, KK, Sills, GR and Lumpkin, TA (1999) Diversity among selected Vigna angularis (azuki) accessions on the basis of RAPD and AFLP markers. Crop Science 39: 268–275.CrossRefGoogle Scholar
Yoon, MS, Doi, K, Kaga, A, Tomooka, N and Vaughan, DA (2000) Analysis of the genetic diversity in the Vigna minima complex and related species in East Asia. Journal of Plant Resources 113: 375–386.CrossRefGoogle Scholar
Zheng, ZJ, Wang, SM and Zong, XX (1997) Food Legumes in China. Beijing: China Agriculture Press (in Chinese).Google Scholar