Hostname: page-component-78c5997874-8bhkd Total loading time: 0 Render date: 2024-11-13T04:04:37.347Z Has data issue: false hasContentIssue false

Crystal structure determination of 1-pentanol from low-temperature powder diffraction data by Patterson search methods

Published online by Cambridge University Press:  01 March 2012

M. Ramírez-Cardona
Affiliation:
Dpt. de Cristallografia, Fac. de Geologia, Universitat de Barcelona, c/Martí-Franqués, 08028-Barcelona, Catalunya, Spain
L. Ventolà
Affiliation:
Dpt. de Cristallografia, Fac. de Geologia, Universitat de Barcelona, c/Martí-Franqués, 08028-Barcelona, Catalunya, Spain
T. Calvet
Affiliation:
Dpt. de Cristallografia, Fac. de Geologia, Universitat de Barcelona, c/Martí-Franqués, 08028-Barcelona, Catalunya, Spain
M. A. Cuevas-Diarte
Affiliation:
Dpt. de Cristallografia, Fac. de Geologia, Universitat de Barcelona, c/Martí-Franqués, 08028-Barcelona, Catalunya, Spain
J. Rius
Affiliation:
Institut de Ciència de Materials de Barcelona (CSIC), Campus de la UAB, 08193, Bellaterra, Catalunya, Spain
J. M. Amigó
Affiliation:
Dpt. de Geologia, Fac, de Químiques, Universitat de València, 46100 Burjassot, Spain
M. M. Reventós
Affiliation:
Dpt. de Geologia, Fac, de Químiques, Universitat de València, 46100 Burjassot, Spain

Abstract

In the course of our research on normal alkanols, the crystal structure of 1-pentanol has been solved by applying Patterson-search methods to laboratory powder X-ray diffraction data recorded on a curved position-sensitive detector (CPS120) at 183 K. The crystal structure was refined with the rigid-body Rietveld least-squares method. The cell is monoclinic, space group P21c, Z=4, and the cell parameters are a=15.592(9) Å, b=4.349(1) Å, c=9.157(1) Å, β=104.7(7)°, V=600.6(3) Å3. There is one molecule in the asymmetric unit with the O–H bond in gauche conformation with respect to the alkyl skeleton. Packing is defined by the hydrogen bonds linking the 1-pentanol molecules along zigzag chains parallel to b.

Type
Invited Articles
Copyright
Copyright © Cambridge University Press 2005

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Abrahamsson, S., Larsson, G., and von Sydow, E. (1960). “The crystal structure of the monoclinic form of n-hexadecanol,” Acta Crystallogr.ACCRA910.1107/S0365110X60001862 13, 770774.Google Scholar
Blanton, T. N., Huang, T. C., Toraya, H., Hubbard, C. R., Robie, S. B., Louër, D., Göbel, H. E., Will, G., Gilles, R., and Raftery, T. (1995). “JCPDS-International center for diffraction data round robin study of sylver behenate. A possible low angle X-ray diffraction calibration standard,” Powder Diffr.PODIE2 10, 9195.Google Scholar
Boultif, A. and Louër, D. (1991). “Indexing of powder diffraction patterns for low-symmetry lattices by the successive dichotomy method,” J. Appl. Crystallogr.JACGAR10.1107/S0021889891006441 24, 987993.Google Scholar
Braun, P. B., Hornstra, J., and Leenhouts, J. I. (1969). Philips Res. Rep.PRREA9 42, 85118.Google Scholar
Cirujeda, J., Ochando, L. E., Amigó, J. M., Rovira, C., Rius, J., and Veciana, J. (1995). “Structure determination from powder X-ray diffraction data of a H-bonded molecular solid with competing ferromagnetic and antiferromagnetic interactions: The 2-(3,4-dihydroxyphenyl)-a-nitronyl nitroxide radical,” Angew. Chem., Int. Ed. Engl.ACIEAY10.1002/anie.199500551 34, 5557.Google Scholar
Fujimoto, K., Yamamoto, T., and Hara, T. (1985). “Crystal structure and molecular motion in octadecanol (C18H37OH),” Rep. Prog. Polym. Phys. Jpn.RPPJAM 28, 163166.Google Scholar
Haget, Y., Mondieig, D., and Cuevas-Diarte, M. A. (1991). “Compositions notamment comme matériaux à changement de phase pour le stockage et la restitution de l’énergie,” Patent Fr 91/08695, PCT/FR 92/00636, US 07/988,949, JP 3543179.Google Scholar
Hornstra, J. (1970). “A program which, using a known part of the molecule, produces the parameters of all atoms,” Crystallographic Computing, edited by Ahmed, F. R. (Munksgaard, Copenhagen) pp. 103109.Google Scholar
Kertes, A. S. and King, C. J. (1987). “Extraction chemistry of low-molecular-weight aliphatic alcohols,” Chem. Rev. (Washington, D.C.)CHREAY 87, 687710.Google Scholar
LeBail, A., Duroy, H., and Fourquet, J. L. (1988). “Ab initio structure determination of LiSbWO6 by X-ray powder diffraction,” Mater. Res. Bull.MRBUAC10.1016/0025-5408(88)90019-0 23, 447452.Google Scholar
Michaud, F., Ventolà, L., Calvet, M. T., Cuevas-Diarte, M. A., Solans, X., and Font-Bardía, M. (2000). “The γ-form of n-eicosanol,” Acta Crystallogr., Sect. C: Cryst. Struct. Commun.ACSCEE 56, 219221.CrossRefGoogle ScholarPubMed
Nordman, C. E. and Schilling, J. W. (1970). “Calculation and Use of Vector Overlap Weights in Patterson Search and Refinement,” in Crystallographic Computing, edited by Ahmed, F. R. (Munksgaard, Copenhagen), pp. 110114.Google Scholar
Ochando, L. E., Amigó, J. M., Rius, J., Louër, D., Fontenas, Ch., and Elguero, J. (2001). “The crystal structure of 3,5-diisopropyl-4-nitropyrazole from powder X-ray diffraction data,” J. Mol. Struct.JMOSB4 562, 1117.CrossRefGoogle Scholar
Ochando, L. E., Rius, J., Louër, D., Claramunt, R. M., Elguero, J., Amigó, J. M., and Lopez, C. (1997). “Phase transitions in tris (3,5-dimethylpyrazol-1-yl) methane. The structure of the high temperature phase from powder X-ray diffraction,” Acta Crystallogr., Sect. B: Struct. Sci.ASBSDK 53, 939944.CrossRefGoogle Scholar
Ohno, K., Yoshida, H., Watanabe, H., Fujita, T., and Matsura, H. (1994). “Conformational study of 1-butanol by the combined use of vibrational spectroscopy and ab initio molecular orbital calculations,” J. Phys. Chem.JPCHAX 98, 69246930.CrossRefGoogle Scholar
Oonk, H. A. J., Mondieig, D., Haget, Y., and Cuevas-Diarte, M. A. (1998). “Perfect families of mixed crystals: The rotator I N-alkane case,” J. Chem. Phys.JCPSA610.1063/1.475431 108, 715722.Google Scholar
Ramírez-Cardona, M. (2002). “Modelització structural de les formes ordenades en la familia dels n-alcanols,” Ph.D. European Thesis, Universitat de Barcelona, Spain.Google Scholar
Rius, J. (2000). “LSP7: A Restrained Rietveld Refinement Program,” Institut de Ciència de Materials de Barcelona, CSIC.Google Scholar
Rius, J. , and Miravitlles, C. (1986). “A full-symmetry translation function: the influence of model misorientation,” Acta Crystallogr., Sect. A: Found. Crystallogr.ACACEQ 42, 402404.Google Scholar
Rius, J. and Miravitlles, C. (1987). “An automated full-symmetry Patterson search method,” J. Appl. Crystallogr.JACGAR 20, 261264.Google Scholar
Rius, J. and Miravitlles, C. (1988). “Determination of crystal structures with large known fragments directly from measured X-ray powder diffraction intensities,” J. Appl. Crystallogr.JACGAR10.1107/S0021889888000603 21, 224227.CrossRefGoogle Scholar
Rius, J., Miravitlles, C., Molins, E., Crespo, I., and Veciana, J. (1990). “Crystal structure of the organic free radical perchlorotriphenylmethyl from X-ray diffraction data,” Mol. Cryst. Liq. Cryst.MCLCA5 187, 155163.Google Scholar
Rodríguez-Carvajal, J. (1998). FULLPROF, version 3.5d, LLB, CEA/Saclay, France.Google Scholar
Sañé, J., Rius, J., Louër, D., and Chanh, N. B. (1996). “Phase transitions in 2-Br-naphthalene. The structure of the low temperature phase from X-ray powder diffraction data,” J. Phys. Chem. SolidsJPCSAW 57, 12511257.CrossRefGoogle Scholar
Sañé, J., Rius, J., Calvet, T., and Cuevas-Diarte, M. A. (1997). “Chiral molecular alloys: Patterson-search structure determination of L-Carvone and DL-Carvone from X-ray powder diffraction data at 218 K,” Acta Crystallogr., Sect. B: Struct. Sci.ASBSDK10.1107/S0108768197002905 53, 702707.CrossRefGoogle Scholar
Schomaker, V. and Trueblood, K. N. (1968). “On the rigid-body motion of molecules in crystals,” Acta Crystallogr., Sect. B: Struct. Crystallogr. Cryst. Chem.ACBCAR10.1107/S0567740868001718 24, 6378.Google Scholar
Seto, T. (1962). “Crystal structures of n-higher alcohols,” Mem. Coll. Sci. XXXA 1, Art. 9.Google Scholar
Small, D. M. (1986). Handbook of Lipid Research (Plenum, New York), Vol. 4, pp. 233241.Google Scholar
Tanford, C. (1980). The Hydrofobic Effect: Formation of Micelles and Biological Membranes, 2nd ed. (Wiley, New York).Google Scholar
Thompson, P., Cox, D. E., and Hastings, J. B. (1987). “Rietveld refinement of Debye-Scherrer synchrotron X-ray data from Al2O3,” J. Appl. Crystallogr.JACGAR10.1107/S0021889887087090 20, 7983.Google Scholar
Ventolà, L., Ramírez, M., Calvet, T., Solans, X., and Cuevas-Diarte, M. A. (2002). “Polymorphism of N-alkanols: 1-heptadecanol, 1-octodecanol, 1-nonadecanol, and 1-eicosanol,” Chem. Mater.CMATEX 14, 508517.CrossRefGoogle Scholar