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Quaternary History of an Endemic Passerine Bird on Corsica Island: Glacial Refugium and Impact of Recent Forest Regression

Published online by Cambridge University Press:  20 January 2017

Jean-Claude Thibault ,
Alice Cibois ,
Roger Prodon  and
Eric Pasquet
Jean-Claude Thibault
Affiliation:
Institut de Systématique, Evolution, Biodiversité, UMR7205, Département Systématique et Evolution, Muséum national d'Histoire naturelle, Case Postale 51, 55 rue Buffon, F75005 Paris, France
Alice Cibois*
Affiliation:
Department of Mammalogy and Ornithology, Natural History Museum of Geneva, CP 6434, 1211 Geneva 6, Switzerland
Roger Prodon
Affiliation:
Centre d'Ecologie Fonctionnelle et Evolutive (UMR 5175), Ecole Pratique des Hautes Etudes, Biogéographie et Ecologie des Vertébrés, Campus CNRS, 1919 route de Mende, F-34293 Montpellier Cedex 5, France
Eric Pasquet
Affiliation:
Institut de Systématique, Evolution, Biodiversité, UMR7205, Département Systématique et Evolution, Muséum national d'Histoire naturelle, Case Postale 51, 55 rue Buffon, F75005 Paris, France UMS MNHN/CNRS 2700 Outils et Méthodes de la Systématique Intégrative « OMSI », Muséum national d'Histoire naturelle, 57 rue Cuvier, F75231 Paris Cedex 05, France
*
⁎Corresponding author. E-mail address:alice.cibois@ville-ge.ch (A. Cibois).
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Abstract

Molecular studies support the hypothesis that Corsica Island was a glacial refugium for a number of forest birds during the Pleistocene. We focused on the Corsican nuthatch (Sitta whiteheadi), an endemic passerine strongly associated with the laricio pine (Pinus nigra laricio). The range of laricio pine has been impacted by the Pleistocene glacial periods and forest has been recently fragmented by cutting and fires. Using both molecular (mitochondrial and nuclear) and morphological characters, we assessed the variation within the nuthatch population. Our results are consistent with the hypothesis that the Corsican nuthatch endured through the late Pleistocene and Holocene climatic variations, and sustained the subsequent cycles of forests reduction/expansion. The results also suggest that the recent anthropization of the landscape resulted in the isolation of a cluster of populations in the northern part of the island. The fragmentation of the habitat of the nuthatch may impede the future of the bird by creating isolated population units between which the gene flow is reduced.

Keywords

Sitta whiteheadiPinus nigraMediterraneanCorsicaLGMHoloceneRefugiumPopulation genetics
Type
Original Articles
Information
Quaternary Research , Volume 85 , Issue 2 , March 2016 , pp. 271 - 278
Copyright
University of Washington

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References

Afzal-Rafii, Z., Dodd, R.S. (2007). Chloroplast DNA supports a hypothesis of glacial refugia over postglacial recolonization in disjunct populations of black pine (Pinus nigra) in western Europe. Molecular Ecology 16, 723–736.CrossRefGoogle ScholarPubMed
Albayrak, T., Gonzalez, J., Drovetski, S., Wink, M. (2012). Phylogeography and population structure of Kr"per's Nuthatch Sitta krueperi from Turkey based on microsatellites and mitochondrial DNA. Journal of Ornithology 153, 405–411.Google Scholar
Anon, (2003). 3"me inventaire forestier de la Corse et cartes associ"es. Inventaire Forestier National, Paris.Google Scholar
Bailey, I., Segelbacher, G., Healy, S., Hurly, T.A., Pemberton, J. (2013). Microsatellite variation in Rufous hummingbirds (Selasphorus rufus) and evidence for a weakly structured population. Journal of Ornithology 1–9.Google Scholar
Bandelt, H.-J., Forster, P., R"hl, A. (1999). Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16, 37–48.Google Scholar
Bellemain, E., Ricklefs, R.E. (2008). Are islands the end of the colonization road?. Trends in Ecology and Evolution 23, 461–468.Google Scholar
BirdLife_International, (2013). Sitta whiteheadi. The IUCN Red List of Threatened Species. Version 2015.2.(< www.iucnredlist.org >. Downloaded on 18 March 2015)Google Scholar
Bisconti, R., Canestrelli, D., Salvi, D., Nascetti, G. (2013). A geographic mosaic of evolutionary lineages within the insular endemic newt Euproctus montanus . Molecular Ecology 22, 143–156.Google Scholar
Brito, P.H. (2005). The influence of Pleistocene glacial refugia on tawny owl genetic diversity and phylogeography in western Europe. Molecular Ecology 14, 3077–3094.Google Scholar
Carcaillet, C., Barakat, H.N., Pana"otis, C., Loisel, R. (1997). Fire and late-Holocene expansion of Quercus ilex and Pinus pinaster on Corsica. Journal of Vegetation Science 8, 85–94.CrossRefGoogle Scholar
Chapuis, M.-P., Estoup, A. (2007). Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution 24, 621–631.Google Scholar
Cibois, A., Beadell, J.S., Graves, G.R., Pasquet, E., Slikas, B., Sonsthagen, S., Thibault, J.-C., Fleischer, R.C. (2011). Charting the course of reed-warblers across the Pacific islands. Journal of biogeography 38, 1963–1975.Google Scholar
Conchon, O. (1975). Les formations quaternaires de type continental en Corse orientale.(PhD Thesis. Paris VI (in French))Google Scholar
Corander, J., Marttinen, P., Sir"n, J., Tang, J. (2008). Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9, 539 Google Scholar
Cornuet, J.M., Luikart, G. (1997). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144, 2001–2014.CrossRefGoogle Scholar
Costa, L.J. (2004). Corse pr"historique. Peuplement d"une "le et modes de vie des soci"t"s insulaires (IX-II mill"naires av. J.-C.). Errance, Paris.Google Scholar
Crawford, N.G. (2010). SMOGD: software for the measurement of genetic diversity. Molecular Ecology Resources 10, 556–557.Google Scholar
Dieringer, D., Sch"tterer, C. (2003). Microsatellite analyser (MSA): a platform independent analysis toll for large microsatellite data sets. Molecular Ecology Notes 3, 167–169.Google Scholar
Drummond, A.J., Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214 Google Scholar
Excoffier, L., Laval, G., Schneider, S. (2005). Arlequin ver. 3.1: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47–50.Google Scholar
Farjon, A., Filer, D. (2013). An Atlas of the World's Conifers: An Analysis of Their Distribution, Biogeography, Diversity and Conservation Status. Brill Academic Pub, Leiden.CrossRefGoogle Scholar
Filardi, C.E., Moyle, R.G. (2005). Single origin of a pan-Pacific bird group and upstream colonization of Australasia. Nature 438, 216–219.Google Scholar
Fok, K.W., Wade, C.M., Parkin, D.T. (2002). Inferring the phylogeny of disjunct populations of the azure-winged magpie Cyanopica cyanus from mitochondrial control region sequences. Proceedings of the Royal Society of London B 269, 1671–1679.Google Scholar
Fontana, J.-P. (2004). Histoire de l'utilisation et de l'exploitation des for"ts dans le Bassin du Fangu. Bulletin de la Soci"t" des Sciences Historiques & Naturelles de la Corse 708-709, 87–178.Google Scholar
Frenzel, B. (1992). Atlas of paleoclimates and paleoenvironments of the Northern Hemisphere. Geographical Research Institute, Hungarian Academy of SCiences, Budapest, Gustav Fischer Verlag, Stuttgart Jena New York.Google Scholar
Fuchs, J., Fjeldsa, J., Pasquet, E. (2005). The use of mitochondrial and nuclear sequence data in assessing the taxonomic status of the endangered Uluguru Bush Shrike Malaconotus alius . Ibis 147, 717–724.Google Scholar
Gamisans, J. (1991). La V"g"tation de la Corse. Compl"ments au Prodrome de la Flore Corse.Jeanmonod, D., Burdet, H.M. Conservatoire et Jardins botaniques de la Ville de Gen"ve, Geneva.Google Scholar
Garza, J., Williamson, E. (2001). Detection of reduction in population size using data from microsatellite loci. Molecular Ecology 10, 305–318.Google Scholar
Gentile, G., Campanaro, A., Carosi, M., Sbordoni, V., Argano, R. (2010). Phylogeography of Helleria brevicornis Ebner 1868 (Crustacea, Oniscidea): Old and recent differentiations of an ancient lineage. Molecular Phylogentics and Evolution 54, 640–646.Google Scholar
Goudet, J. (1995). FSTAT (Version 1.2): a computer program to calculate F-Statistics. Journal of Heredity 86, 485–486.CrossRefGoogle Scholar
Haas, S., Smith, J., Kimball, R., Clark, A.M. (2009). Isolation and characterization of polymorphic microsatellite markers for the brown-headed nuthatch (Sitta pusilla). Conservation Genetics 10, 1393–1395.Google Scholar
Hewitt, G.M. (2004). Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions: Biological Sciences 359, 183–195.Google Scholar
Hey, J. (2010). Isolation with migration models for more than two populations. Molecular Biology and Evolution 27, 905–920.Google Scholar
Hey, J., Nielsen, R. (2007). Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences of the United States of America 104, 2785–2790.Google Scholar
Ketmaier, V., Manganelli, G., Tiedemann, R., Giusti, F. (2010). Peri-Tyrrhenian phylogeography in the land snail Solatopupa guidoni (Pulmonata). Malacologia 52, 81–96.CrossRefGoogle Scholar
Kryukov, A., Iwasa, M.A., Karizawa, R., Suzuki, H., Pinsker, W., Haring, E. (2004). Synchronic east-west divergence in azure-winged magpies (Cyanopica cyanus) and magpies (Pica pica). Journal of Zoological Systematics and Evolutionary Research 42, 342–351.CrossRefGoogle Scholar
Kvist, L., Viiri, K., Dias, P.C., Rytk"nen, S., Orell, M. (2004). Glacial history and colonization of Europe by the blue tit Parus caeruleus . Journal of Avian Biology 35, 352–359.Google Scholar
Lambeck, K., Antonioli, F., Purcell, A., Silenzi, S. (2004). Sea-level change along the Italian coast for the past 10,000 yr. Quaternary Science Reviews 23, 1567–1598.Google Scholar
Leys, B., Finsinger, W., Carcaillet, C. (2014). Historical range of fire frequency is not the Achilles' heel of the Corsican black pine ecosystem. Journal of Ecology 102, 381–395.Google Scholar
Librado, P., Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451–1452.Google Scholar
Magri, D., Vendramin, G.G., Comps, B., Dupanloup, I., Geburek, T., G"m"ry, D., Scaron, A.N., Lata?owa, M., Litt, T., Paule, L., Roure, J.M., Tantau, I., Van Der Knaap, W.O., Petit, R.J., De Beaulieu, J.-L. (2006). A new scenario for the Quaternary history of European beech populations: palaeobotanical evidence and genetic consequences. New Phytologist 171, 199–221.Google Scholar
Matthysen, E. (1998). The nuthatches. T & A D Poyser, London.Google Scholar
Nesje, A., Dahl, S.O. (1993). Late glacial and Holocene glacier fluctuations and climate variations in western Norway: a review. Quaternary Science Reviews 12, 255–261.Google Scholar
Newton, I. (2003). The Speciation and Biogeography of Birds. Academic Press, Amsterdam.Google Scholar
Nylander, J.A.A. (2004). MrModeltest v2. Program distributed by the author. Evolutionary Biology Center, Uppsala University, Google Scholar
ONF, (2006). Contribution " la conduite des peuplements de pin laricio et habitats associ"s. Tome 2. Enjeux et gestion. Office National des For"ts, Sarreguemines.Google Scholar
Pasquet, E., Barker, F.K., Martens, J., Tillier, A., Cruaud, A., Cibois, A. (2014). Evolution within the nuthatches (Sittidae: Aves, Passeriformes): molecular phylogeny, biogeography, and ecological perspectives. Journal of Ornithology 155, 755–765.CrossRefGoogle Scholar
Peltier, W.R. (1994). Ice age paleotopography. Science 195"195, Google Scholar
Pimont, F., Prodon, R., Rigolot, E. (2011). Comparison of postfire mortality in endemic Corsican black pine (Pinus nigra ssp. laricio) and its direct competitor (Pinus pinaster). Annals of Forest Science 68, 425–432.CrossRefGoogle Scholar
Pons, J.M., Olioso, G., Cruaud, C., Fuchs, J. (2011). Phylogeography of the Eurasian green woodpecker (Picus viridis). Journal of Biogeography 38, 311–325.Google Scholar
Pons, J.-M., Thibault, J.-C., Fournier, J., Olioso, G., Rakovic, M., Tellini Florenzano, G., Fuchs, J. (2015). Genetic variation among Corsican and continental populations of the Eurasian treecreeper (Aves: Certhia familiaris) reveals the existence of a palaeoendemic mitochondrial lineage. Biological Journal of the Linnean Society 115, 134–153.CrossRefGoogle Scholar
Porlier, M., Garant, D., Perret, P., Charmantier, A. (2012). Habitat-linked population genetic differentiation in the blue tit Cyanistes caeruleus . Journal of Heredity 103, 781–791.Google Scholar
Prentice, I.C., Jolly, D., participants, B. (2000). Mid-Holocene and glacial-maximum vegetation geography of the northern continents and Africa. Journal of biogeography 27, 507–519.Google Scholar
Price, J.J., Johnson, K.P., Clayton, D.H. (2004). The evolution of echolocation in swiftlets. Journal of Avian Biology 35, 135–143.Google Scholar
Prodon, R., Thibault, J.-C., Dejaifve, P.A. (2002). Expansion vs. compression of bird altitudinal ranges on a Mediterranean island. Ecology 83, 1294–1306.Google Scholar
Rambaut, A., Drummond, A.J. (2007). Tracer v1.4.Available from http://beast.bio.ed.ac.uk/TracerGoogle Scholar
Reille, M. (1975). Contribution pollenanalytique " l'histoire tardiglaciaire et holoc"ne de la v"g"tation de la montagne corse.PhD ThesisUniversit" Aix-Marseille III, Google Scholar
Reille, M. (1977). Quelques aspects de l'activit" humaine en Corse durant le Subatlantique et ses cons"quences sur la v"g"tation. Suppl"ment Bulletin AFEQ 43, 329–341.Google Scholar
Reille, M. (1992). New pollen-analytical researches in Corsica : the problem of Quercus ilex L. and Erica arborea L., the origin of Pinus halepensis Miller forests. New Phytologist 122, 359–378.Google Scholar
Reille, M., Gamisans, J., de Beaulieu, J.L., Andrieu, V. (1997). The late-glacial at Lac de Creno (Corsica, France): a key site in the western Mediterranean basin. New Phytologist 135, 547–559.CrossRefGoogle Scholar
Rogers, A.R., Harpending, H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9, 552–569.Google Scholar
Rota, M.P., Cancellieri, J.-A. (2001). De la nature " l'histoire: les for"ts de la Corse. Editions Alain Piazzola, Ajaccio.Google Scholar
Saito, D.S., Saitoh, T., Nishiumi, I. (2005). Isolation and characterization of microsatellite markers in Ijima's leaf warbler, Phylloscopus ijimae (Aves: Sylviidae). Molecular Ecology Notes 5, 666–668.CrossRefGoogle Scholar
Salvi, D., Harris, D.J., Bombi, P., Carretero, M.A., Bologna, M.A. (2010). Mitochondrial phylogeography of the Bedriaga's rock lizard, Archaeolacerta bedriagae (Reptilia: Lacertidae) endemic to Corsica and Sardinia. Molecular Phylogentics and Evolution 56, 690–697.Google Scholar
Salvi, D., Bisconti, R., Canestrelli, D. (2015). High phylogeographical complexity within Mediterranean islands: insights from the Corsican fire salamander. Journal of Biogeography10.1111/jbi.12624Google Scholar
Schmitt, T. (2007). Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Frontiers in zoology 4, 1–13.Google Scholar
Schneider, S., Excoffier, L. (1999). Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152, 1079–1089.Google Scholar
Segelbacher, G., Rolshausen, G., Weis-Dootz, T., Serrano, D., Schaefer, H.M. (2008). Isolation of 10 tetranucleotide microsatellite loci in the blackcap (Sylvia atricapilla). Molecular Ecology Resources 8, 1108–1110.Google Scholar
Shackleton, J.C., Van Andel, T.H., Runnels, C.N. (1984). Coastal paleogeography of the central and western Mediterranean during the last 125,000 years and its archaeological implications. Journal of Field Archaeology 11, 307–314.Google Scholar
Simi, P. (1982). Pr"cis de g"ographie de la Corse. Soci"t" des Sciences Historiques et Naturelles de la Corse 11, 1–608.Google Scholar
Taberlet, P., Fumagalli, L., Wust-Saucy, A.-G., Cosson, J.-F. (1998). Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology 7, 453–464.Google Scholar
Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585–595.Google Scholar
Thibault, J.-C. (2006). Conna"tre les Oiseaux de Corse, Acelli di Corsica. Albiana and Parc naturel r"gional de Corse, Ajaccio.Google Scholar
Thibault, J.-C., Prodon, R., Villard, P., Seguin, J.-F. (2006). Habitat requirements and foraging behaviour of the Corsican nuthatch Sitta whiteheadi . Journal of Avian Biology 37, 477–486.Google Scholar
Thibault, J.-C., Hacquemand, D., Moneglia, P., Pellegrini, H., Prodon, R., Recorbet, B., Seguin, J.-F., Villard, P. (2011). Distribution and population size of the Corsican nuthatch Sitta whiteheadi . Bird Conservation International 21, 199–206.CrossRefGoogle Scholar
Thinon, M. (1998). Etude de l'aire potentielle du pin laricio en Corse. Approche p"doanthracologique. Office de l'Environnement de la Corse & Institut M"diterran"en d'Ecologie et de Pal"o"cologie, (38 Pp.)Google Scholar
Thinon, M. (2003). Premi"re approche p"doanthracologique de l'histoire de la v"g"tation de la r"serve naturelle de Scandola. Universit"s d'Aix-Marseille I et III, Institut M"diterran"en d'Ecologie et de Pal"o"cologie, (21 Pp.)Google Scholar
Villard, P., Besnard, A., Thibault, J.-C., Recorbet, B., Prodon, R. (2014). Selection of mature and old stands by Corsican nuthatch Sitta whiteheadi in harvested forests. Ibis 156, 132–140.Google Scholar
Vu, V.Q. (2011). ggbiplot: A ggplot2 based biplot. R package, version 0.55. http://github.com/vqv/ggbiplotGoogle Scholar
Wanner, H., Beer, J., B"tikofer, J., Crowley, T.J., Cubasch, U., Fl"ckiger, J., Goosse, H., Grosjean, M., Joos, F., Kaplan, J.O., K"ttel, M., M"ller, S.A., Prentice, I.C., Solomina, O., Stocker, T.F., Tarasov, P., Wagner, M., Widmann, M. (2008). Mid- to Late Holocene climate change: an overview. Quaternary Science Reviews 27, 1791–1828.Google Scholar
Weir, J.T., Schluter, D. (2008). Calibrating the avian molecular clock. Molecular Ecology 17, 2321–2328.Google Scholar
Weiss, M.-C. (1976). Contribution " l'"tude du Niolo pr"historique. L'abri Albertini " Albertacce Archeologia corsa, M"moires & Etudes 1, 75–95.Google Scholar
Weiss, M.-C. (1992). Les indices pr"historiques de la transhumance dans le nord-ouest de la Corse. Archeologia della pastorizia nell'Europa meridionale. Rivista di Studi Liguri 1, 231–240.Google Scholar
Zaghi, D. (2008). Management of Natura 2000 habitats. 9530 *(Sub)-Mediterranean pine forests with endemic black pines European Commission, Google Scholar
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