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Computational analysis of rice (Oryza sativa L.) panicle topology and ripening

Published online by Cambridge University Press:  24 July 2007

Jordan O. Hay  and
Roger M. Spanswick
Jordan O. Hay
Affiliation:
Department of Biological and Environmental Engineering, Cornell University, Ithaca, New York14853-5701, USA
Roger M. Spanswick*
Affiliation:
Department of Biological and Environmental Engineering, Cornell University, Ithaca, New York14853-5701, USA
*
*Fax: +1 607 255 4080, Email: rms6@cornell.edu
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Abstract

The processes involved in rice (Oryza sativa L.) panicle ripening vary with time and topological grain position. Methods to describe the functioning and connectivity of the grains on a panicle could aid the analysis of these processes. Hence, we addressed the difficulty of encoding and representing panicle topology. Array-based decomposition and computational methods were developed to encode and analyse panicle topology and grain traits. The technique, applied to the analysis of dry matter accumulation, clearly represented the basipetal succession of asynchronous grain ripening on a panicle. These methods should be useful for the spatial and temporal analysis of a number of panicle processes and attributes, including molecular ones, involved with ripening.

Keywords

caryopsiscomputational analysisgrain fillingOryza sativapanicle architecturepanicle topologyrice
Type
Research Analysis
Information
Seed Science Research , Volume 16 , Issue 4 , December 2006 , pp. 243 - 250
Copyright
Copyright © Cambridge University Press 2006

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References

Chino, M., Hayashi, H. and Fukumorita, T. (1987) Chemical composition of rice phloem sap and its fluctuation. Journal of Plant Nutrition 10, 1651–1661.Google Scholar
Fukumorita, T. and Chino, M. (1982) Sugar, amino acid and inorganic contents in rice phloem sap. Plant and Cell Physiology 23, 273–283.Google Scholar
Furbank, R.T., Scofield, G.N., Hirose, T., Wang, X.D., Patrick, J.W. and Offler, C.E. (2001) Cellular localisation and function of a sucrose transporter OsSUT1 in developing rice grains. Australian Journal of Plant Physiology 28, 1187–1196.Google Scholar
Godin, C. (2000) Representing and encoding plant architecture: a review. Annals of Forest Science 57, 413–438.Google Scholar
Hay, J.O. (2005) Growth, architecture, cell separation, electrophysiology and sucrose transport of ripening rice caryopses. PhD dissertation, Cornell University, Ithaca, New York, USA.Google Scholar
Hay, J.O. and Spanswick, R.M. (2006) Mechanical and enzymatic separation of ripening rice (Oryza sativa L.) caryopsis tissues. Seed Science Research 16, 223–227.Google Scholar
Hirose, T., Imaizumi, N., Scofield, G.N., Furbank, R.T. and Ohsugi, R. (1997) cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.). Plant and Cell Physiology 38, 1389–1396.Google Scholar
Hirose, T., Takano, M. and Terao, T. (2002) Cell wall invertase in developing rice caryopsis: molecular cloning of OsCIN1 and analysis of its expression in relation to its role in grain filling. Plant and Cell Physiology 43, 452–459.Google Scholar
Hoshikawa, K. (1989) The growing rice plant: An anatomical monograph. Tokyo, Nobunkyo.Google Scholar
Hoshikawa, K. (1993) Anthesis, fertilization and development of caryopsis. pp. 339–376in Matsuo, T.; Hoshikawa, K. (Eds) Science of the rice plant. Tokyo, Food and Agricultural Policy Research Center.Google Scholar
Ishimaru, T., Matsuda, T., Ohsugi, R. and Yamagishi, T. (2003) Morphological development of rice caryopses located at the different positions in a panicle from early to middle stage of grain filling. Functional Plant Biology 30, 1139–1149.Google Scholar
Ishimaru, T., Hirose, T., Matsuda, T., Goto, A., Takahashi, K., Sasaki, H., Terao, T., Ishii, R., Ohsugi, R. and Yamagishi, T. (2005) Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relationship to grain filling in rice (Oryza sativa L.): comparison of caryopses located at different positions in a panicle. Plant and Cell Physiology 46, 620–628.Google Scholar
Kobayasi, K. and Imaki, T. (1997) Varietal differences of rice in differentiation and degeneration of secondary rachis-branches and spikelets in terms of their nodal distribution on a rachis. Japanese Journal of Crop Science 66, 578–587.Google Scholar
Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J. (2001) The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. Developmental Biology 231, 364–373.Google Scholar
Matsushima, S. (1967) Crop science in rice: Theory of yield determination and its application. Tokyo, Fuji Publishing.Google Scholar
Mitra, S. and Bera, A.K. (2003) Influence of grain density on some qualitative characters of rice (Oryza sativa L.). Crop Research 25, 400–405.Google Scholar
Mohapatra, P.K., Patel, R. and Sahu, S.K. (1993) Time of flowering affects grain quality and spikelet partitioning within the rice panicle. Australian Journal of Plant Physiology 20, 231–241.Google Scholar
Oparka, K.J. and Gates, P. (1981a) Transport of assimilates in the developing caryopsis of rice (Oryza sativa L.): The pathways of water and assimilated carbon. Planta 152, 388–396.Google Scholar
Oparka, K.J. and Gates, P. (1981b) Transport of assimilates in the developing caryopsis of rice (Oryza sativa L.): Ultrastructure of the pericarp vascular bundle and its connections with the aleurone layer. Planta 151, 561–573.Google Scholar
Patel, R. and Mohapatra, P.K. (1996b) Assimilate partitioning within floret components of contrasting rice spikelets producing qualitatively different types of grains. Australian Journal of Plant Physiology 23, 85–92.Google Scholar
Scofield, G.N., Hirose, T., Gaudron, J.A., Upadhyaya, N.M., Ohsugi, R. and Furbank, R.T. (2002) Antisense suppression of the rice sucrose transporter gene, OsSUT1, leads to impaired grain filling and germination but does not affect photosynthesis. Functional Plant Biology 29, 815–826.Google Scholar
Takeoka, Y., Shimizu, M. and Wada, T. (1993) Panicles. pp. 295–338in Matsuo, T.; Hoshikawa, K. (Eds) Science of the rice plant. Tokyo, Food and Agricultural Policy Research Center.Google Scholar
Tsukaguchi, T., Horie, T. and Koshioka, M. (1999) Dynamics of abscisic acid levels during grain-filling in rice: comparisons between superior and inferior spikelets. Plant Production Science 2, 223–226.Google Scholar
Xu, X.B., and Vergara, B.S. (1986) Morphological changes in rice panicle development: a review of literature. IRRI Research Paper Series 117, 1–13.Google Scholar