The identity and phylogenetic placement of photobionts associated with two lichen-forming fungi, Umbilicaria spodochroa and Lasallia pustulata were examined. These lichens commonly grow together in high abundance on coastal cliffs in Norway, Sweden and Finland. The mycobiont of U. spodochroa reproduces sexually through ascospores, and must find a suitable algal partner in the environment to re-establish the lichen symbiosis. Lasallia pustulata reproduces mainly vegetatively using symbiotic propagules (isidia) containing both symbiotic partners (photobiont and mycobiont). Based on DNA sequences of the internal transcribed spacer region (ITS) we detected seven haplotypes of the green-algal genus Trebouxia in 19 pairs of adjacent thalli of U. spodochroa and L. pustulata from five coastal localities in Norway. As expected, U. spodochroa associated with a higher diversity of photobionts (seven haplotypes) than the mostly asexually reproducing L. pustulata (four haplotypes). The latter was associated with the same haplotype in 15 of the 19 thalli sampled. Nine of the lichen pairs examined share the same algal haplotype, supporting the hypothesis that the mycobiont of U. spodochroa might associate with the photobiont ‘pirated’ from the abundant isidia produced by L. pustulata that are often scattered on the cliff surfaces. Up to six haplotypes of Trebouxia were found within a single sampling site, indicating a low level of specificity of both mycobionts for their algal partner. Most photobiont strains associated with species of Umbilicaria and Lasallia, including samples from this study, represent phylogenetically closely related taxa of Trebouxia grouped within a small number of main clades (Trebouxia sp., T. simplex/T. jamesii, and T. incrustata+T. gigantea). Three of the photobiont haplotypes were found only in U. spodochroa thalli.

In two lichen species, Hypogymnia physodes and Lecanora conizaeoides, often used as model organisms for pollution-sensitive and pollution-tolerant epiphytic lichens, respectively, the hypothesis was tested that the toxitolerance of the Trebouxia photobiont limits the tolerance of the entire lichen symbiosis. Being lecanoralean-trebouxioid associations, H. physodes and L. conizaeoides represent the most common type of lichens. Photobionts of both lichen species deriving from microhabitats with varying supply of S and heavy metals were identified using nuclear ITS nrDNA sequencing. The photobiont of L. conizaeoides was identified as T. simplex, whereas the photobiont of H. physodes belongs to an undescribed Trebouxia species, related to T. jamesii subsp. angustilobata and provisionally named as T. hypogymniae Hauck & Friedl ined. Since T. hypogymniae ined. is also known from Lecidea silacea, which is characteristic of rock and slag with high heavy metal content, a high sensitivity of this alga to pollutants is unlikely to be a key factor for the relatively low toxitolerance of H. physodes. Furthermore, the photobiont cannot be crucial for the extremely high toxitolerance of L. conizaeoides, as T. simplex is also known from pollution-sensitive lichens of the fruticose genus Pseudevernia. These findings suggest that the photobiont is not generally a key factor determining pollution sensitivity in the most common type of lichen symbiosis. The high specificity for T. simplex in L. conizaeoides in existing populations of L. conizaeoides suggest that already established thalli could be a source of photobiont cells for re-lichenization.

The genetic diversity of photobionts in the lichen Protoparmeliopsis muralis was examined to determine the identity of the photobiont and the level of selectivity for the photobiont by the mycobiont. Forty ITS rDNA sequences of photobionts from thirty nine specimens of Protoparmeliopsis muralis have been determined. The photobiont species were identified both by direct comparison with the available sequences and by phylogenetic analysis. The sequences obtained from P. muralis specimens belonged to different Trebouxia clades. The most common photobionts were T. incrustata and an unidentified lineage, here named as “muralis I”. Less common photobionts were T. asymmetrica and T. gigantea. Two unidentified Trebouxia spp. and a photobiont that belonged to the clade that includes T. impressa, T. flava and T. potteri were also found to be associated with P. muralis. Such flexibility has not been reported to date. Moreover, two different photobionts were found in a single specimen. They belonged to the T. gigantea clade and “muralis I” lineage. The low level of selectivity with respect to the photobiont may constitute an important aspect in that Protoparmeliopsis muralis is one of the most successful urban lichens in the world.

The utility of plastic cover slips as a substratum for in situ study of lichen developmental stages is further explored in a neotropical foliicolous lichen community and in a European temperate corticolous community. Twenty-one months after placement in the tropical forest, the cover slips bore foliicolous lichen thalli with several species producing characteristic ascocarps and ascospores, indicating the suitability of the substratum for completion of the life cycle of these lichens. On cover slips placed within the temperate corticolous community, lichen propagules anchored to the substratum with relatively short attachment hyphae but did not develop further within the one year observation period. Intimately intermixed microbial communities of short-celled, mainly pigmented fungi and chlorophyte algae developed upon the transparent substratum. Among the algae, Trebouxia cells, often in groups showing cell division and without associated lichenizing hyphae, were commonly observed. The potential significance of the free-living populations in the life cycle of Trebouxia and in those of Trebouxia-associated lichen fungi is discussed.

The photobiont ultrastructure of the epiphytic lichens Bryoria fuscescens and Bryoria fremontii was studied along the pollution gradient from two Cu-Ni smelters in Nikel and Monchegorsk in northern Finland and north-western Russia. The relationship between ultrastructural characteristics of B. fuscescens and environmental factors (i.e. climate, atmospheric SO2 and bark element concentrations) was studied by using a principal component analysis (PCA) aiming to assess the air quality in a northern environment. Based on PCA, increased plasmolysis and mitochondrial changes in the Trebouxia photobiont were significantly correlated with elevated pollutant concentrations. Degenerated cells, showing altered chloroplasts and electron-translucent pyrenoglobuli, occurred in lichens growing 35–50 km from the Monchegorsk smelter. Cell wall and cytoplasmic lipid volumes, and size of pyrenoglobuli, positively correlated with the distance from the Monchegorsk smelter. Vacuoles and electron-opaque vacuolar deposits were significantly increased at the Finnish site in the vicinity of a pulp mill. Swelling of mitochondrial cristae and thylakoids showed little correlation with environmental factors, but indicated of initial stage of injuries and were observed at several slightly polluted sites in northern Finland and north-western Russia. The results suggest that the severe photobiont injuries of lichens are strongly associated with poor air quality.