The coat protein of bacteriophage MS2 is known
to bind specifically to an RNA hairpin formed within the
MS2 genome. Structurally this hairpin is built up by an
RNA double helix interrupted by one unpaired nucleotide
and closed by a four-nucleotide loop. We have performed
crystallographic studies of complexes between MS2 coat
protein capsids and four RNA hairpin variants in order
to evaluate the minimal requirements for tight binding
to the coat protein and to obtain more information about
the three-dimensional structure of these hairpins. An RNA
fragment including the four loop nucleotides and a two-base-pair
stem but without the unpaired nucleotide is sufficient
for binding to the coat protein shell under the conditions
used in this study. In contrast, an RNA fragment containing
a stem with the unpaired nucleotide but missing the loop
nucleotides does not bind to the protein shell.