The activity level and specific behaviours exhibited by captive animals are crucial indicators of welfare. Stereotypies, or repetitive behaviours that have no apparent function or goal, are performed by animals experiencing poor conditions in their environment and indicate welfare concerns. Changes in the housing environment in particular may have critical influences on behaviour and welfare. Here, we measured behavioural changes in a captive pinyon jay (Gymnorhinus cyanocephalus) population (n = 10) associated with a shift from single to pair housing. Using automated video processing, we show that pair housing greatly reduced overall activity levels in these birds. The stark reduction in activity was surprising, as we expected that social housing would increase interactions between birds, thus increasing activity levels. Upon further analysis, however, we found that stereotypic behaviours, such as beak scraping, jumping, pecking, and route tracing decreased after pair housing, whereas the positive welfare behaviours of perching and preening increased. Our results indicate that pair housing may reduce overall activity in pinyon jays; however, this reduction is primarily in stereotypic behaviours.

During investigation of common linnet (Linaria cannabina) blood using the buffy coat method one bird with microfilariae in the blood was found. The morphometric description of adult worms corresponded to the Chandlerella sinensis. This species was found for the first time in common linnets. DNA sequences of cox1 and 28S gene fragments of adult worm recovered during necropsy was identical to that from the microfilariae in the bird blood. Phylogenetic analysis of the cox1 gene fragment clustered this parasite with Chandlerella quiscali. Histological examination revealed the presence of microfilariae in the lumen of small capillaries and other blood vessels in different organs, but no inflammations were notice. The greatest number of microfilariae was in the lungs. Even if there was no inflammation, but vessels associated with the lungs were markedly distended with blood, parabronchial walls were thickened and, in some cases, almost completely obstructing the lumen. The large number of microfilariae in lungs indicates possible disturbance of gas exchange in the lungs adversely affected the ability of the bird to exercise and made breathing difficult at rest. The investigation of circadian rhythm of the microfilariae showed that C. sinensis microfilariae in blood of common linnet were more numerous at night and morning and less numerous at midday. The survival rate of mosquitoes infected with C. sinensis microfilariae was significantly lower than that of uninfected mosquitoes.

Sea-level rise threatens both human communities and vulnerable species within coastal areas. Joint spatial planning can allow conservation and social resiliency goals to work in synergy. We present a case study integrating distribution information of a threatened saltmarsh bird, the eastern black rail (Laterallus jamaicensis jamaicensis), with social information to facilitate such joint planning. We constructed a distribution model for the species within an urbanizing coastal region (New Jersey, USA) and integrated this with publicly available parcel and protected area data to summarize ownership patterns. We estimated that c. 0.3–2.8% (c. 260–2200 ha) of available saltmarsh is occupied by eastern black rail, most of which is publicly owned (79%). Privately owned saltmarsh was spread across nearly 5000 individual parcels, 10% of which contained areas with the highest likelihood of rail presence according to our model (top quartile of predicted occupancy probabilities). Compared with all privately owned saltmarsh, parcels with probable rail habitat were larger (median: 5 versus 2 ha), contained more marsh (87% versus 59%) and were less economically valuable (US$11 200 versus US$36 100). Our approach of integrating species distributions with landownership data helps clarify trade-offs and synergies in species conservation and coastal resiliency planning.

Phylogenetic analyses can be used to resolve taxonomic uncertainties and reconstruct a species’ evolutionary history. This can be combined with ecological data to predict missing life history traits which are important for creation of conservation management strategies. We investigated the evolutionary and life history of the ‘Critically Endangered’ Grenada Dove Leptotila wellsi by estimating its phylogenetic placement and using this new phylogeny to test the accuracy of phylogenetic comparative methods for estimating both documented and unknown life history traits. We extracted DNA from two Grenada Dove samples and obtained sequences from three mitochondrial markers: Cytochrome oxidase I (COI), NADH dehydrogenase 2 (ND2) and Cytochrome b (Cyt b); and one nuclear marker: β-Fibrinogen intron 7 (β-FIB). We present the first genetic data obtained for the Grenada Dove. Our data identify the Grey-Chested Dove Leptotila cassinii as the species which shares both a most recent common ancestor, with an estimated divergence of approximately 2.53 million years ago, and the smallest genetic distance (P = 0.0303) with the Grenada Dove. Life history trait values for the Grenada Dove predicted from our analyses using phylogenetic imputation are: clutch size = 2 (± 0.09) eggs; clutches per year = 1.4 (± 0.81); incubation time = 14.2 (± 0.75) days; hatching weight = 3.8 g (± 1.05) and single imputation: fledging age (genus median) = 15.5 days, longevity (genus median) = 8.6 years. This study contributes novel information regarding evolutionary history and life history characteristics to inform long-term conservation actions for a ‘Critically Endangered’ species.

Two introduced carnivores, the European red fox Vulpes vulpes and domestic cat Felis catus, have had extensive impacts on Australian biodiversity. In this study, we collate information on consumption of Australian birds by the fox, paralleling a recent study reporting on birds consumed by cats. We found records of consumption by foxes on 128 native bird species (18% of the non-vagrant bird fauna and 25% of those species within the fox’s range), a smaller tally than for cats (343 species, including 297 within the fox’s Australian range, a subset of that of the cat). Most (81%) bird species eaten by foxes are also eaten by cats, suggesting that predation impacts are compounded. As with consumption by cats, birds that nest or forage on the ground are most likely to be consumed by foxes. However, there is also some partitioning, with records of consumption by foxes but not cats for 25 bird species, indicating that impacts of the two predators may also be complementary. Bird species ≥3.4 kg were more likely to be eaten by foxes, and those <3.4 kg by cats. Our compilation provides an inventory and describes characteristics of Australian bird species known to be consumed by foxes, but we acknowledge that records of predation do not imply population-level impacts. Nonetheless, there is sufficient information from other studies to demonstrate that fox predation has significant impacts on the population viability of some Australian birds, especially larger birds, and those that nest or forage on the ground.

Angiostrongylus cantonensis causes severe neurological disorders in a wide range of warm-blooded animals, including several avian species. A laboratory isolate of A. cantonensis originating from French Polynesia, genotyped as clade 2, was used to assess the effect of experimental infection in chicken and Japanese quail. Low dose groups of birds were infected orally by 100 L3 larvae, high dose groups by 1500 L3 larvae and the birds in the third group were fed three infected snails, mimicking a natural infection. Clinical signs during the first week after infection, haematology, biochemistry, gross lesions and histology findings were used to assess the pathology of the infection. Some of the infected birds showed peripheral eosinophilia, while mild neurological signs were seen in others. No larvae were observed in serial sections of the central nervous system of infected birds 1 week after infection and no major gross lesions were observed during necropsy; histopathology did not reveal lesions directly attributable to A. cantonensis infection. Our results suggest that galliform birds are not highly susceptible to A. cantonensis infection and open a question of the importance of Galliformes in endemic areas as natural pest control, lowering the number of hosts carrying the infective larvae.

In order to ensure low-altitude safety, a tracking and recognition method of unmanned aerial vehicle (UAV) and bird targets based on traditional surveillance radar data is proposed. First, several motion models for UAV and flying bird targets are established. Second, the target trajectories are filtered and smoothed with multiple motion models. Third, by calculating the time-domain variance of the model occurrence probability, the model conversion probability of the target is estimated, and then the target type is identified and classified. The effectiveness and robustness of the algorithm is demonstrated by several groups of Monte Carlo simulation experiments, including setting different recognition steps, different model transformation probability, filtering and smoothing algorithm comparison. The algorithm is also successfully applied on the ground-truth radar data collected by the low-altitude surveillance radar at airport and coastal environments, where the targets of UAVs and flying birds could be tracked and recognised.

Temporal and spatial scarcity of water in semi-arid and seasonal ecosystems often leads to changes in movements and behaviour of large vertebrates, and in the neotropics this dynamic is poorly understood due to logistical and methodological limitations. Here we used camera trapping to elucidate variation in patterns of seasonal use of waterholes and pathways by 10 large-mammal and four large-bird species in the dry forest of north-western Costa Rica. From 2011 to 2015, we deployed trail cameras at 50 locations, including waterholes and three types of pathway (roads, human trails and animal paths). We used Generalized Linear Models to evaluate the effect of location and seasonality on the rates at which independent photographs were taken. We found interacting effects of location and seasonality for the capuchin monkey (Cebus capucinus), the tiger heron (Trigrisoma mexicanum), the white-tailed deer (Odocoileus virginianus) and the tapir (Tapirus bairdii) suggesting that these species were the most influenced by waterholes during the dry season. Comparison of waterhole sites and specific types of pathways (roads, animal paths and human trails) showed that location influenced photo-capture rates of almost all species, suggesting a useful insight to avoid and account for bias in camera trap studies. Furthering our ecological understanding of seasonal water regimes and large vertebrates’ behaviours allow for better understanding of the consequences of climate change on them.

A small fauna of vertebrates is recorded from the Insect Limestone, Bembridge Marls Member, Bouldnor Formation, late Priabonian, latest Eocene, of the Isle of Wight, UK. The taxa represented are unidentified teleost fishes, lizards including a scincoid, unidentified birds and the theridomyid rodent Isoptychus. The scincoid represents the youngest record of the group in the UK. Of particular note is the taphonomic interpretation based on the preservation of anatomical parts of land-based tetrapods that would have been most likely transported to the site of deposition by wind, namely bird feathers and pieces of shed lizard skin. These comprise the majority of the specimens and suggest that the dominant transport mechanism was wind.

Altitudinal gradients provide tractable, replicated systems in which to study changes in species richness and community composition over relatively short distances. Previously, richness was often assumed to follow a monotonic decline with altitude, but recent meta-analyses show that more complex patterns, including mid-altitude richness peaks, are also prevalent in birds. In this study, we used point counts to survey birds at multiple altitudes on three mountains on the island of Borneo in Sundaland, an area for which quantitative analyses of avian altitudinal distribution are unavailable. In total we conducted 1088 point counts and collected associated habitat data at 527 locations to estimate species richness by altitude on Mt Mulu (2376 m), Mt Pueh (1550 m) and Mt Topap Oso (1450 m). On Mulu, the only mountain with an intact habitat gradient, bird species richness peaks at 600 m. Richness appeared to peak at 600 m on Totap Oso as well, but on Pueh it peaked several hundred metres higher. The richness peak on Mulu differs from that predicted by null models and is instead caused by the overlap of distinct lowland and montane avifaunas, supporting the faunal overlap hypothesis. This finding provides further evidence that a lack of coincidence between peak turnover and peak richness is not sufficient evidence to rule out faunal overlap as a causal factor.

Madagascar is one of the most threatened biodiversity hotspots, and protection of its biodiversity is becoming increasingly urgent as deforestation of the island continues. For the long-term success of conservation efforts it is essential that key ecological processes, such as seed dispersal, are protected and restored. Therefore, the identification of ecological gaps is a vital task. For Madagascar, only little is known about plant–animal interactions, and traditional methods of ecological research are too time-consuming to provide crucial information about breakdowns in these interactions. To identify likely dispersal gaps we therefore used a theoretical approach to analyse plant–disperser interactions in Madagascar. We used data science tools to impute missing data on relevant plant traits to subsequently predict the most likely dispersal agents for each of Madagascar's endemic plant species. We found that 38% of the endemic species (N = 8,784) are endozoochorous, and among these 26–41% display a primate syndrome and 17–19% a bird syndrome (depending on the definition of syndromes). This lower percentage of endozoochorous species and higher percentage of species with a primate syndrome in Madagascar compared to other tropical areas reflects the unusual disperser guild on the island. Only five bird species but 20 lemur species are frugivorous, and 16 of those lemur species are currently threatened with extinction. The disappearance of frugivorous lemurs would significantly change the vegetation dynamics of Madagascar's ecosystems, and a high proportion of Madagascar's endemic plants would enter an extinction vortex.

The purpose of the present study was to evaluate locomotor strategies during development in domestic chickens (Gallus gallus domesticus); we were motivated, in part, by current efforts to improve the design of housing systems for laying hens which aim to reduce injury and over-exertion. Using four strains of laying hens (Lohmann Brown, Lohmann LSL lite, Dekalb White and Hyline Brown) throughout this longitudinal study, we investigated their locomotor style and climbing capacity in relation to the degree (0 to 70°) of incline, age (2 to 36 weeks) and the surface substrate (sandpaper or wire grid). Chicks and adult fowl performed only walking behavior to climb inclines ⩽40° and performed a combination of wing-assisted incline running (WAIR) or aerial ascent on steeper inclines. Fewer birds used their wings to aid their hind limbs when climbing 50° inclines on wire grid surface compared with sandpaper. The steepness of angle achieved during WAIR and the tendency to fly instead of using WAIR increased with increasing age and experience. White-feathered strains performed more wing-associated locomotor behavior compared with brown-feathered strains. A subset of birds was never able to climb incline angles >40° even when using WAIR. Therefore, we suggest that inclines of up to 40° should be provided for hens in three-dimensional housing systems, which are easily negotiated (without wing use) by chicks and adult fowl.

Blood parasites are considered some of the most significant pathogens for the conservation of penguins, due to the considerable morbidity and mortality they have been shown to produce in captive and wild populations of these birds. Parasites known to occur in the blood of penguins include haemosporidian protozoans (Plasmodium, Leucocytozoon, Haemoproteus), piroplamid protozoans (Babesia), kinetoplastid protozoans (Trypanosoma), spirochete bacteria (Borrelia) and nematode microfilariae. This review provides a critical and comprehensive assessment of the current knowledge on these parasites, providing an overview of their biology, host and geographic distribution, epidemiology, pathology and implications for public health and conservation.

Biopedturbation, or animal-caused soil disturbance, may be important for development and maintenance of small-scale heterogeneity in ecosystems with the potential to alter seed mortality and recruitment. However, its role in tropical forests has been largely ignored. This study explored effects of vertebrate biopedturbation on seed (1) microsite heterogeneity, (2) predation and (3) germination in a West African rain forest. Exclosure experiments were used to study how biopedturbation altered burial and movements of seeds of four common canopy species. Effect of seed burial on removal by seed predators was also examined. Germination of the dominant canopy species (Raphia palma-pinus) in swamp forest was tested within artificial disturbances mimicking that of a locally common but endangered mammal, the Liberian mongoose (Liberiictis kuhni), which was estimated to turn over the entire forest floor in this habitat in c. 8 mo. Seed exposure to biopedturbation for 20 d (n = 80) led to an overall 6.5-fold increase in small-scale horizontal movement and increased probability of burial (6–52% higher), varying by species. Burial effectively eliminated seed removal for all four species (n = 160) by seed predators over 20 d. Germination of Raphia palma-pinus seeds (n = 100) was enhanced by 17.5% on average over 4 mo in simulated disturbances. Results suggest biopedturbation may be important for seedling recruitment and that loss of species with this functional role could have underappreciated yet important impacts on tropical plant communities.

An avian retinopetal nucleus, the isthmo-optic nucleus (ION), is known to receive predominant inputs from the ipsilateral optic tectum. We injected biocytin into the ION in the Japanese quail, and retrogradely labeled tectal neurons projecting to the isthmo-optic (IO) neurons, or the tecto-IO neurons, with an extraordinary Golgi-like quality. Somata of the tecto-IO neurons were located in layer 9 of the tectum. The tecto-IO neurons did not have apical dendrites extending into superficial retino-recipient layers (layers 2–7), but had descending dendrites ramified in layers 9–12. They also possessed short ascending dendrites ramifying in the upper half of layer 9. This dendritic morphology suggests that main input to the tecto-IO neurons may not be of retinal origin. The tecto-IO neurons were spatially arranged in a regular pattern. Distances between neighboring tecto-IO neurons were 50–100 μm. The dendrites of each tecto-IO neuron were not widely dispersed in the horizontal plane, and were confined in a vertically oriented column of 100–200 μm diameter. They possessed axon collaterals extending horizontally in layers 12 and 13. The estimated total number of the tecto-IO neurons was approximately 7000–10,000, which is almost identical to the total cell number of the IO neurons. To label a small number of the tecto-IO terminals, biocytin was injected into a confined area of the optic tectum. The tecto-IO fibers densely arborized in a restricted space of the ION, which is comparable to the dimension of dendritic arborization of individual IO neurons. It is suggested that single tecto-IO neurons may make contact with single IO neurons. IO neurons are known to make synaptic contact with single target cells (association cells of Cajal) in the retina (Uchiyama & Ito, 1993; Uchiyama et al., 1995). The arborization pattern of the tecto-IO neurons' dendrites indicates that the tecto-IO neurons receive very local information in sensory and sensorimotor coordinate space. The morphology of the tecto-IO terminals suggests that the spatially confined information that drives the tecto-IO neurons is sent in parallel to single IO neurons, and then further to single retinal association cells of Cajal. Cellular-level restricted projection patterns of the tecto-isthmo-retinal system may reflect its function for centrifugal control of retinal function.

Enlargement of the forebrain, including elaboration of the thalamus, has occurred independently within different groups of vertebrates. Dorsal and ventral thalamic territories can be identified in most vertebrates, with variations in the presence of GABAergic neuronal components. An inhibitory thalamic reticular nucleus-like input to the dorsal thalamus might be a common feature, as might the organizational plan of two divisions of the dorsal thalamus, the lemnothalamus and collothalamus. Differential, independent elaboration of these divisions occurred in mammals and sauropsids (reptiles and birds), making their evolutionary relationships challenging to discern. Not all of the crucial features identified for mammalian thalamocortical circuitry are present in other vertebrates, but birds share the most features identified to date. These include specific and nonspecific thalamic relay neurons, reciprocal pallial projections, and a GABAergic thalamic reticular nucleus with some but not all hodological features. Because birds share many higher-level cognitive abilities and, thus, possibly higher-level consciousness, with mammals, comparison of the thalamocortical (thalamopallial) circuitry might prove a fruitful resource for testing functional hypotheses. Comparisons with selected other vertebrates that likewise have relatively large brain:body ratios and also exhibit some cognitively sophisticated behaviors, such as cichlid fish, might also prove valuable.

The claw geometry of birds can be used to predict their mode of life. Previous studies, however, have not considered how bird size might affect these predictions. Thus, in the present study, the geometric scaling relationships of bird claws are examined for a variety of extant birds with different modes of life: predatory, climbing, perching or ground-dwelling. Measurements of hind-limb claw radius (i.e. claw size) and claw angle (i.e. claw ‘hookedness’) of the third digit claw were made on 120 species of bird ranging from 0.0057 kg to 44 kg in body mass. Claw radius was found to be proportional to (body mass)0.34 across all species. Claw angle was found to increase with body mass for predatory and climbing birds (i.e. bigger birds have relatively more hooked claws), and decrease with body mass for ground-dwelling birds (i.e. bigger birds have relatively less hooked or flatter claws). No significant relationship was found between claw angle and body mass for perching birds. Mode of life could not be predicted with any certainty using measurements of either claw radius or claw angle, suggesting difficulty in assigning fossil species such as Archaeopteryx to a specific locomotor category. As claw design should enable the claw to withstand the forces placed upon it, further work is needed to establish the stresses experienced by the claws of different types of bird.