The mammalian signal recognition particle (SRP) catalytically
promotes cotranslational translocation of signal sequence
containing proteins across the endoplasmic reticulum membrane.
While the S-domain of SRP binds the N-terminal signal sequence
on the nascent polypeptide, the Alu domain of
SRP temporarily interferes with the ribosomal elongation
cycle until the translocation pore in the membrane is correctly
engaged. Here we present biochemical and biophysical evidence
for a hierarchical assembly pathway of the SRP Alu
domain. The proteins SRP9 and SRP14 first heterodimerize
and then initially bind to the Alu RNA 5′
domain. This creates the binding site for the Alu
RNA 3′ domain. Alu RNA then undergoes a
large conformational change with the flexibly linked 3′
domain folding back by 180° onto the 5′ domain
complex to form the final compact Alu ribonucleoprotein
particle (Alu RNP). We discuss the possible mechanistic
consequences of the likely reversibility of this final
step with reference to translational regulation by the
SRP Alu domain and with reference to the structurally
similar Alu RNP retroposition intermediates derived
from Alu elements in genomic DNA.