Fanfaniite, Ca4Mn2+Al4(PO4)6(OH)4·12H2O, from the Hühnerkobel pegmatite mine, Bavaria, has been characterised by chemical analyses and synchrotron single-crystal diffraction. The average crystal structure was refined in space group C2/c (cell parameters a = 10.055(2), b = 24.132(5), c = 6.2590(10) Å, β = 91.35(3)°) to compare with reported monoclinic structures of other calcioferrite-group minerals with general formula Ca4AB4(PO4)6(OH)4·12H2O, A = Mn2+, Fe2+, Mg, B = Al, Fe3+. The average structure contains disordered half-occupied A sites and associated coordinated water molecules. The diffraction data for fanfaniite contains weak reflections that violate the c-glide condition, as also reported for montgomeryite, and in addition contains extremely weak, diffuse reflections requiring a doubling of a, as reported for kingsmountite. Structure refinements were conducted for the noncentrosymmetric C2 model used for montgomeryite and for the P$\bar 1$ model used for kingsmountite. The fanfaniite diffraction data is better explained by the triclinic model with doubled a cell parameter, although the extent of ordering of the A-site cations is considerably lower (56%) than reported for kingsmountite (85%). If the C2 model contributes, it can only be at the scale of the unit cell.