To understand better the microbial functional populations which are involved in methanogenesis and denitrification in paddy soils with rice straw (RS) and/or nitrogen fertiliser (potassium nitrate, N) application, the dynamics of methanogens and the denitrifying community were monitored simultaneously during the incubation period. The results show that the community structure of methanogens remained relatively stable among treatments based on 16S rDNA analysis, but fluctuated based on 16S rRNA. The Methanocellaceae and Methanosarcinaceae dominated all treatments at 16S rDNA and 16S rRNA level, respectively. RS+N increased the relative abundance of Methanosaetaceae at the 16S rRNA level, while there was an increasing trend in that Methanomicrobiaceae following RS addition at the 16S rDNA level. RS and/or N did not significantly change the diversity of methanogens targeting both 16S rDNA and 16S rRNA. RS and RS+N increased copy numbers of methanogens targeting both 16S rDNA and 16S rRNA analyses. The community structure and abundance of nirS and nosZ-containing denitrifiers, and the diversity of nirS-containing denitrifiers was significantly altered only by the N treatment. These results indicate that the community structure, diversity and abundance of methanogens respond differently to RS addition at the 16S rDNA and 16S rRNA levels.

The early actinopterygian Mesopoma planti is reassigned to a new genus on the basis of data obtained from high-resolution computed tomography (CT) scans of an unusually well-preserved specimen from the Early Pennsylvanian of Lancashire, UK. The former M. planti is joined by two further Mesopoma species from the Late Mississippian of Scotland. CT scans of the key planti specimen bring to light new details of the dermal skull, pectoral girdle and fin. Among the cranial features, CT data reveal a specialised, anteriorly projecting preopercular bone, the location of the spiracular duct opening, presence of a so-called coronoid process on the lower jaw and the full three-dimensional shape of the snout. Of the pectoral girdle and fin, for the first time in a Palaeozoic actinopterygian it has been possible to complete a three-dimensional reconstruction of the entire endoskeleton in articulation. The fin presents new diversity within a conservative general pattern, revealing for the first time a double propterygium. Girdle shape shows that the fin orientation is derived: rotated with the leading edge dorsalmost. These details are used to identify unexploited character states for use in phylogenetic analyses, while functional implications of the fin and girdle suggest advanced locomotory control emerging among different groups of post-Devonian ray-finned fishes.

Soil moisture is a key factor affecting vegetation growth and survival in arid and semi-arid regions. Knowledge of deep soil moisture dynamics is very important for guiding vegetation restoration and for improving land management practices on the water-limited Loess Plateau. Temporal changes and vertical variations in deep soil moisture (at soil depths of 0–600cm) combined with soil moisture availability were monitored in situ under Caragana korshinskii shrubs of different ages (named CK-10a, CK-20a and CK-35a) in the Loess hilly region during the growing season of 2013. The soil moisture content (SMC) under C. korshinskii shrubs of different ages was highly consistent with the seasonal precipitation variations and generally decreased as follows: CK-10a>CK-20a>abandoned land>CK-35a. The SMC varied greatly over time during the growing season (P<0.01), decreasing from April to May and then slowly increasing with some fluctuation from June to October. The SMC drastically decreased with depth from 0–300cm and then gradually increased with some fluctuation from 300–600cm. A critical turning point and transition zone connecting the shallow and deep soil moisture occurred at 200–300cm. Therefore, the soil profile was divided into active, secondary active and relatively steady soil layers in terms of soil moisture. The SMC fluctuated at depths of 0–100cm and 300–400cm and was relatively stable in the deeper soil layers. The amount of available soil moisture gradually decreased as the forest stand age increased, especially at CK-35a, where most of the soil moisture was unavailable for plant use. In addition, our study indicates that a large-scale restoration strategy with pure shrubland or woodland may not be suitable for soil moisture recovery in arid environments.

The Permo-Carboniferous eurynotiforms show conspicuous modifications to postcranial and cranial morphology relative to primitive actinopterygian conditions, and represent an important early example of functional experimentation within ray-finned fishes. Although eurynotiforms are represented by abundant articulated fossil material, the internal anatomy of the group is not well known. Microcomputed tomography (μCT) of Eurynotus crenatus from the early Carboniferous (Viséan) Wardie Shales Member of the Gullane Formation of Wardie, Scotland provides detailed information on the jaws, palate and dentition. The lower jaw is deep and bears a well-developed convex dental plate on the prearticular/coronoids. The dentary bears a dorsally directed posterior process and lacks any obvious marginal dentition. The prearticular bears a low coronoid process. Apart from the first and second dermopalatines, and a likely accessory vomer, bones of the palate are tightly sutured or fused. The upper dental plate comprises a longitudinal, concave horizontal dental surface that occludes with the convex lower toothplate, and a more vertical region consisting of anastomosing ridges. The parasphenoid has a narrow anterior corpus and a broad posterior stalk that bears a pronounced midline notch. The smooth, irregularly punctated surfaces of the dental plates are formed by closely packed teeth with conjoined crowns, providing clues to the evolution of the more monolithic toothplates of Amphicentrum from the peg-like teeth reported in the earliest and most anatomically generalised eurynotiforms. The feeding apparatus shows many qualitative and quantitative features consistent with the processing of hard prey items. Eurynotus and its relatives show the first clear example of jaw and dental structures consistent with durophagy among actinopterygians. The origin of the group in the early Carboniferous is suggestive of diversification into newly available ecological roles in the aftermath of the end-Devonian extinction.

The purpose of this paper was to study the interaction effects of rainfall regime and slope length on runoff and soil loss under different land uses. Event runoff and soil loss in forest, shrub and grass were measured in plots with lengths of 5, 9 and 13m in the Loess Plateau from 2008 to 2016. A total of 59 erosive rainfall events were recorded and classified into three rainfall regimes. Firstly, the results showed that the runoff coefficient was grass>shrub>forest, and soil loss was grass>forest>shrub, but the differences between forest and shrub in runoff and between grass and forest in soil loss did not reach significant levels. Secondly, rainfall regimes had an important effect on runoff and soil loss under different land uses. The lowest runoff coefficients and the highest soil loss in regime 2 were found in shrub and forest land, respectively, which differed from that of regime 1. In total, rainfall regime 1 had the highest runoff coefficient of 0.84–2.06%, followed by regime 3 with 0.33–0.88% and regime 2 with 0.04–0.06%. Soil loss in forest and grass land had a different order of regime 3>regime 1>regime 2. Thirdly, both the runoff coefficient and soil loss decreased with increasing plot length, while the effect of slope length on runoff/soil loss were influenced by land use type and rainfall regimes.

Ramsay Heatley Traquair, the eminent Victorian Scottish palaeoichthyologist and museum curator, procured an extensive collection of Palaeozoic fishes from across Scotland with the help of local miners and quarrymen. One very productive locality near Edinburgh was Loanhead. Traquair described numerous fossil fish from this Serpukhovian site, including four lungfish taxa: Ctenodus interruptus, Sagenodus quinquecostatus, Uronemus splendens and Ctenodus angustulus. The first three are now quite well known, but the fourth was only briefly described and never figured. It is based entirely on tooth plates, which are unusual both in their very small size and the arrangement of the tooth ridges. They lack the diagnostic characters of Ctenodus tooth plates and are here renamed Clackodus angustulus. A further taxon, Conchopoma sp., has recently been identified. Represented by a spade-shaped parasphenoid and denticulated jaw elements, it is the earliest known occurrence of the genus, extending its range into the Mississippian. A sixth taxon may be represented by an isolated parasphenoid bearing an anterior process, previously only seen in Devonian lungfish. The presence of up to six lungfish taxa at a single locality is unprecedented in the Carboniferous and indicates that the high level of lungfish diversity encountered in the Tournaisian of the Scottish Borders continued throughout the Mississippian, adding to the growing evidence that post-Devonian lungfish evolution was not as limited as previously proposed. This may have been due to changes in tooth plate growth, enabling greater variation in dentition and diet. In most Devonian taxa, tooth plate growth can be explained by comparison with that in extant forms, but analysis of Carboniferous tooth plates suggest growth was different in many taxa, possibly based on more than one pioneer tooth, allowing for novel patterns of tooth ridges and different types of teeth to develop on the same plate.

Each piece of data is valuable for unearthing the earliest history of tetrapod origin. Despite frequently incomplete preservation, each skeletal element provides important information on the morphology, phylogeny and faunistic diversity of early tetrapodomorphs. We describe here new and earlier collected material from the fossil vertebrate site Yam-Tesovo on the Oredezh River (Leningrad Region, northwestern Russia) in the deposits of the Yam-Tesovo Formation within the Amata Regional Stage (?lowermost Frasnian, Upper Devonian). Upon similarity of their dermal ornamentation, two mandibular fragments are suggested to belong to the new tetrapodomorph taxon Rubrognathuskuleshovi n. gen. et sp. This species demonstrates a general ‘elpistostegalian' morphological pattern with some early tetrapod characters. The new taxon is characterised by an almost closed intercoronoid fossa, a prearticular that is strongly convex in section and bearing small teeth along its dorsal margin, low vertical coronoid laminae and coronoid fangs that enter the coronoid tooth row. The mandibular canal runs partly in open groove or opens to the surface by a row of large pores. The dermal ornament consists of a network of small ridges forming tubercles in the nodes. The postfrontal assigned to Tetrapodomorpha shows a ‘tetrapod-like' pits-and-ridges sculpturing and a supraorbital ridge characteristic of early tetrapods as well as ‘elpistostegalians'. Its long posterolateral bone margin demonstrates a lateral projection similar to that in Tiktaalik and unknown in other ‘elpistostegalians' and early tetrapods. An unusually flattened vomer is doubtfully related to the tetrapodomorph genus Livoniana Ahlberg, Lukševičs & Mark-Kurik, 2000, based upon characteristic multiple tooth rows. Teeth in rows decrease labially and show no clearly enlarged fang pairs. New finds of the last two decades present the earliest records of some tetrapod characters in non-limbed tetrapodomorphs. This challenges previous hypotheses on the origin of tetrapods.

Pangquangou National Nature Reserve is well known as ‘the distribution centre of Prince Rupprecht's larch (Larix principis-rupprechtii)' in China. Community variation in Prince Rupprecht's larch forest provides habitat heterogeneity for animals, especially for the endemic and endangered brown-eared pheasant (Crossoptlon mantchuricum). In this study a total of 120 quadrats (each 10×10m) were established to measure and record species composition and six environmental variables to examine the underlying variables that control community variation. We applied a multivariate regression tree analysis to detect community variation, and used redundancy analysis-based variation partitioning to separate the effects of environmental variables on community variation. The results show that Prince Rupprecht's larch forest in the Pangquangou National Nature Reserve can be represented by eight community types. The amount of total species variability captured by all environmental variables was 20.6%, and the cumulative percentage variance of species–environment relationships was 95.8%. However, analyses with a conditional effect approach revealed that elevation, aspect and litter thickness contribute the most to community variation. The pure and joint effects of these three explanatory variables were separated with variation partitioning analyses. The results highlight that the effect of elevation accounts for the largest fraction of community variation in Prince Rupprecht's larch forest.

Hyneria lindae is one of the largest Devonian sarcopterygians. It was found in the Catskill Formation (late Famennian) of Pennsylvania, USA. The current study focuses on the palaeohistology of the humerus of this tristichopterid and supports a low ossification rate and a late ossification onset in the appendicular skeleton. In addition to anatomical features, the large size of the cell lacunae in the cortical bone of the humerus mid-shaft may suggest a large genome size and associated neotenic condition for this species, which could, in turn, be a partial explanation for the large size of H. lindae. The low metabolism of H. lindae revealed here by bone histology supports the hypothesis of an ambush predatory behaviour. Finally, the lines-of-arrested-growth pattern and late ossification of specimen ANSP 21483 suggest that H. lindae probably had a long juvenile stage before reaching sexual maturity. Although very few studies address the life-history traits of stem tetrapods, they all propose a slow limb development for the studied taxa despite different ecological conditions and presumably distinct behaviours. The bone histology of H. lindae would favour the hypothesis that a slow long-bone development could be a general character for stem tetrapods.

Heavy metal contamination in the paddy soils of China is a serious concern because of its health risk through transfer in food chains. A field experiment was conducted in 2014–2015 to investigate the long-term effects of different biochar amendments on cadmium (Cd) and arsenic (As) immobilisation in a contaminated paddy field in southern China. Two types of biochar, a rice-straw-derived biochar (RB) and a coconut-by-product-derived biochar (CB), were amended separately to determine their impacts on rice yield and their efficacy in reducing Cd and As in rice. The two-year field experiment showed that biochar amendments significantly improved the rice yields and that CB is superior to RB, especially in the first growth season. Using a large amount of biochar amendment (22.5tha–1) significantly increased soil pH and total organic carbon, and concomitantly decreased the Cd content in rice grains over the four growth seasons, regardless of biochar type and application rate. Arsenic levels in rice were similar to the control, and results from this study suggest that there was a sustainable effect of biochar on Cd sequestration in soil and reduction of Cd accumulation in rice for at least two years. Biochar amendment in soil could be considered as a sustainable, reliable and cost-effective option to remediate heavy metal contamination in paddy fields for long periods.

The consequences of urbanisation for Earth's biogeochemical cycles are largely unexplored. Copper (Cu) in urban soils is being accumulated mainly due to anthropogenic activities under rapid urbanisation. The increasing Cu concentrations may contribute to altering soil nitrogen (N) cycling in urban ecosystems through modulating denitrification processes. This research aims to identify how Cu impacts urban soil denitrification functions and denitrifier abundance. An urban park soil with a background total Cu concentration of 7.9μgg–1 was incubated anaerobically with different Cu amendments (10, 20, 40, 80 and 160μg Cu g–1 soil), similar to prevalent Cu contents in urban soils. We evaluated the soil denitrification functions using the acetylene (C2H2) inhibition method and assessed the denitrifier abundance by quantitative polymerase chain reaction (qPCR) analyses of denitrifying marker genes (nirK, nirS and nosZ). At the function level, we observed that both the potential soil denitrification activity and the N2O emission rate due to denitrification were significantly (P<0.05) inhibited by Cu; even the lowest Cu addition (10μg Cu g–1 soil) drastically affected the denitrification function. Moreover, Cu significantly (P<0.05) decreased the abundance of nirK and nirS genes at the additions of 160μg Cu g–1 soil and 40μg Cu g–1 soil, respectively, whereas it had no clear impact on nosZ gene copies. Further correlation analyses revealed that the potential denitrification activity was positively correlated to the copy numbers of nirK and nirS genes, but it was not correlated to nosZ gene abundance. These findings indicate that Cu additions inhibited soil denitrification function and decreased denitrifier abundance in the investigated urban park soil. Our results suggest that Cu accumulation in urban soils, resulting from urbanisation, may generally influence denitrification in urban ecosystems.

The fin-to-limb transition is heralded as one of the most important events in vertebrate evolution. Over the last few decades our understanding of how limbs evolved has significantly increased; but, hypotheses for why limbs evolved are still rather open. Fishes that engage their fins to ‘walk' along substrate may provide some perspective. The charismatic frogfishes are often considered to have the most limb-like fins, yet we still know little about their underlying structure. Here we reconstruct the pectoral fin musculoskeletal anatomy of the scarlet frogfish to identify adaptations that support fin-assisted walking behaviours. The data are compared to three additional anglerfish species: the oval batfish, which represents an independent acquisition of fin-assisted walking; and two pelagic deep-sea swimmers, the triplewart seadevil and ghostly seadevil. Our results clearly show broad musculoskeletal differences between the pectoral fins of swimming and walking anglerfish species. The frogfish and batfish have longer and more robust fins; larger, differentiated muscles; and better developed joints, including a reverse ball-and-socket glenoid joint and mobile ‘wrist'. Further, the frogfish and batfish show finer-scale musculoskeletal differences that align with their specific locomotor ecologies. Within, we discuss the functional significance of these anatomical features in relation to walking, the recurring evolution of similar adaptations in other substrate locomoting fishes, as well as the selective pressures that may underlie the evolution of limbs.

This study aimed to improve the performance of an intermediate covering of soils in landfill sites by using agents such as calcined lime, sawdust and polyacrylamide (PAM). Compressive strength, permeability and water-holding capacity of modified soils were measured, and the effects of regulating pH and pollutant removal in leachate were also investigated in a leaching experiment. The results indicate that three modifying agents could improve the compressive strength of an intermediate soil cover. The permeability of lime-treated soil increased as the amount of lime increased, while that of sawdust- and PAM-modified soil declined. Results from a leaching experiment show that lime- and sawdust-modified soils could improve leachate quality. The pH value of leachate from 5% lime-modified soils was 7.78, which is suitable for the metabolism of anaerobic microorganisms. The removal efficiencies of chemical oxygen demand, total organic carbon, total nitrogen and volatile fatty acids in leachate permeating lime- and sawdust-modified intermediate cover was improved so that the pollution load of leachate was reduced. The water-holding capacities for 20% sawdust and 0.5% PAM-modified soils were 65.19% and 43.52%, respectively, which helps to maintain the optimum water content of landfill. The water-holding capacity of PAM-modified samples declined in alkaline soil. It is concluded that the combination of 5% sawdust, 5% lime and 90% soil would be optimal for an intermediate covering layer.

Cartilaginous fishes have a long evolutionary history dating back 440 million years and include model organisms in a number of fields of biological research. However, comparative developmental studies of these organisms, particularly neuroanatomical investigations, still remain sparse. Here, pre-hatching to adult developmental stages of the Little Skate, Leucoraja erinacea, are investigated using micro-computed tomography scanning in conjunction with staining procedures designed to improve visualisation of soft tissues. Within the ear, the anatomy of the skeletal labyrinth changes during ontogeny and differs substantially from the underlying membranous system, contrary to previous observations in sharks. Additionally, substantial morphological remodelling characterises the parietal fossa, which appears initially as a massive and hook-like structure and subsequently becomes slender and surrounded by soft tissue. The sizes of the vestibular system and neurocranium increase isometrically from pre- to post-hatching phases, and then exponentially after the post-hatching stages.

Soil moisture is a key factor in the ecohydrological cycle in water-limited ecosystems, and it integrates the effects of climate, soil, and vegetation. The water balance and the hydrological cycle are significantly important for vegetation restoration in water-limited regions, and these dynamics are still poorly understood. In this study, the soil moisture and water balance were modelled with the stochastic soil water balance model in the Loess Plateau, China. This model was verified by monitoring soil moisture data of black locust plantations in the Yangjuangou catchment in the Loess Plateau. The influences of a rainfall regime change on soil moisture and water balance were also explored. Three meteorological stations were selected (Yulin, Yan'an, and Luochuan) along the precipitation gradient to detect the effects of rainfall spatial variability on the soil moisture and water balance. The results showed that soil moisture tended to be more frequent at low levels with decreasing precipitation, and the ratio of evapotranspiration under stress in response to rainfall also changed from 74.0% in Yulin to 52.3% in Luochuan. In addition, the effects of a temporal change in rainfall regime on soil moisture and water balance were explored at Yan'an. The soil moisture probability density function moved to high soil moisture in the wet period compared to the dry period of Yan'an, and the evapotranspiration under stress increased from 59.5% to 72% from the wet period to the dry period. The results of this study prove the applicability of the stochastic model in the Loess Plateau and reveal its potential for guiding the vegetation restoration in the next stage.

The hypothesis that tetrapods evolved from elpistostegids during the Frasnian, in a predominantly aquatic context, has been challenged by the discovery of Middle Devonian tetrapod trackways predating the earliest body fossils of both elpistostegids and tetrapods. Here I present a new hypothesis based on an overview of the trace fossil and body fossil evidence. The trace fossils demonstrate that tetrapods were capable of performing subaerial lateral sequence walks before the end of the Middle Devonian. The derived morphological characters of elpistostegids and Devonian tetrapods are related to substrate locomotion, weight support and aerial vision, and thus to terrestrial competence, but the retention of lateral-line canals, gills and fin rays shows that they remained closely tied to the water. Elpistostegids and tetrapods both evolved no later than the beginning of the Middle Devonian. The earliest tetrapod records come from inland river basins, sabkha plains and ephemeral coastal lakes that preserve few, if any, body fossils; contemporary elpistostegids occur in deltas and the lower reaches of permanent rivers where body fossils are preserved. During the Frasnian, elpistostegids disappear and these riverine-deltaic environments are colonised by tetrapods. This replacement has, in the past, been misinterpreted as the origin of tetrapods.

Soil erosion can pose a serious problem to environmental quality and sustainable development. On the Tibetan Plateau, soil erosion is one of the main challenges to regional ecological security. Our analysis investigates soil erosion and evaluates its economic value in alpine steppe, alpine meadow, alpine desert steppe and forest ecosystems on the Tibetan Plateau. Analysis was carried out from 1984 to 2013. The results show that the annual average potential soil erosion, practical soil erosion and soil conservation calculated by the Revised University Soil Loss Equation model were 2.19×109ta–1, 2.16×109ta–1 and 2.72×107ta–1, respectively. The economic value of retaining soil nutrients, reducing the formation of wasteland and the economic benefit of reducing sediment deposition were 1.98×108RMBa–1, 2.55×1012RMBa–1 and 7.44×104RMBa–1, respectively. From comparing different ecosystems, we found that the forest ecosystem had the greatest soil retention and economic values. We also found that the potential and actual soil erosion values were extremely high on the Tibetan Plateau. The study highlights that state and local policymakers must give greater emphasis to ecological protection in the future.

The earliest tetrapodomorph fishes appear in Chinese deposits of Early Devonian age, and by the Middle Devonian they were widespread globally. Evidence for the earliest digitated tetrapods comes from largely uncontested Middle Devonian trackways and Late Devonian body fossils. The East Gondwana Provence (Australasia, Antarctica) fills vital gaps in the phylogenetic and biogeographic history of the tetrapods, with the Gondwanan clade Canowindididae exhibiting a high degree of endemism within the early part of the stem tetrapod radiation. New anatomical details of Koharalepis, from the Middle Devonian Aztec Siltstone of Antarctica, are elucidated from synchrotron scan data. These include the position of the orbit, the condition of the hyomandibular, the shape of the palate and arrangement of the vomerine fangs. Biogeographical and phylogenetic models of stem tetrapod origins and radiations are discussed.