Macroalgae play important ecological roles, including as hosts for a wide range of epifauna. However, the diversity relationships between macroalgae and epifauna are poorly understood for most tropical host species and algal morphologies. This study aims to characterize and analyse the diversity of invertebrates present amongst macroalgae with three distinct morphologies (three-dimensional, filamentous and foliose) across different tropical intertidal sites in Singapore. Morphological and DNA barcoding tools were employed for epifaunal species identification, and ordination statistics and multiple linear regression were used to test the effects of algal morphology, species and site on community structure and diversity of epiphytic invertebrates. Overall, epifaunal communities were distinct among sites and algal morphologies, and diversity was affected significantly by algal morphology. In particular, filamentous macroalgae hosted the highest abundance of epifauna dominated mainly by amphipods, which were able to take advantage of the high surface area to volume ratio in filamentous algal mats as a consequence of their thinner forms. Foliose species showed a significantly negative effect on invertebrate diversity. Our findings highlight the diverse associations between intertidal macroalgae and invertebrates with high turnover between algal morphology and sites that contribute to the high biodiversity of tropical shores. Future studies should consider the effects of the host habitat, seasonality and more algal species on epifaunal diversity.

The Bay of Málaga is located in a high biodiversity and productivity area that harbours a wide variety of commercial species exploited by different fishing fleets. Benthic and demersal fauna from circalittoral soft bottoms have been studied using a benthic dredge (BD) (8 sampling stations) and an otter trawl (OT) (8 sampling stations on a seasonal basis). Some sediment and water column variables, as well as the trawling activity, have also been studied and used for analysing their linkage with the fauna. A total of 287 species have been found in these bottoms and fish, molluscs and crustaceans represented the most diverse and abundant faunistic groups. A new record of the decapod Hippolyte leptometrae for Spanish waters is also included in this study. Some multivariate analyses using BD samples indicated the presence of three assemblages, but these seem to represent different facies of a single benthic community due to the absence of acute sediment changes and significant differences in the fauna. OT samples only displayed differences related to seasons but not to sediment types or depth. These seasonal differences seem to be linked to biological and ecological features of both dominant and/or commercial species. Mud and organic matter contents (%OM) in sediment, as well as the temperature, were the main variables linked to the spatial distribution of the benthic community identified with BD, whereas medium and coarse sand as well as gravel contents were the main variables linked to the changes of the epibenthic and demersal assemblage resulting from OT samples. The information of this study is of importance for improving the knowledge on the biodiversity of circalittoral soft bottoms of the Mediterranean and Alboran Sea as well as for the potential creation of a Marine Fisheries Reserve in the Bay of Málaga.

Nutrient enrichment is a significant cause of ecosystem change in coastal habitats worldwide. This study focuses on the change in a benthic macroinvertebrate community and environmental quality as assessed through different biotic indices following the construction of a sewage outfall pipe in the west of Scotland, from first implementation to seven years after operation of the pipe. Benthic macroinvertebrates are an important part of marine ecosystems because they mediate ecosystem processes and functions, are a key part of food webs and they provide many ecosystem services. Results indicated a clear change in benthic communities over time with an increase in species richness and changes to benthic community composition (specifically feeding type, bioturbation mode and ecological group) towards those indicative of organic enrichment. No clear spatial zonation was observed because organic carbon content increased over the entire area. According to a suite of benthic indices calculated, some negative changes were detectable following the start of sewage disposal, but largely negative community changes, and a change from ‘good’ to ‘moderate’ quality, only occurred seven years after implementation. The increase in species richness in response to increasing disturbance reduced the utility of a multi-metric index, the Infaunal Quality Index, which, instead of amplifying the signal of negative impact, dampened it. We suggest that any change in communities, regardless of direction, should be heeded, and species richness is a particularly sensitive and early warning indicator for this, but a suite of approaches is required to understand benthic community changes.

The three-dimensional coral scaffolds formed by the skeletons of the cold-water corals Madrepora oculata and Lophelia pertusa represent an important deep-sea hard substratum and create an optimal shelter for a rich associated fauna in which the contribution of Porifera has still not been fully considered. The taxonomic analysis of sponges collected from two Sardinian canyons (Nora and Coda Cavallo, 256–408 m) and associated with the dead coral matrix resulted in 28 species, including new records for the Mediterranean Sea, Italian fauna or Central Tyrrhenian Sea. In addition, for many species this is the first finding associated with the coral framework or the first documentation of the in situ morphology. The taxonomic comparison with sponge assemblages associated with coral frameworks from Santa Maria di Leuca, Strait of Sicily and Bari Canyon, gave the opportunity to evaluate the similarities among geographically separated banks. Overall, the percentage of exclusive species (recorded only in one site), is very high (81%) and only one species is shared by all four sites, suggesting a low connectivity among the sponge communities. The percentage of shared species is higher for the Maltese community, supporting the role of the Sicily Channel as a crossroads between the communities of the eastern and western Mediterranean basins. Here, 55% of the sponges associated to the coral framework are also reported in shallow-water coralligenous assemblages, indicating a high bathymetric connectivity as well as an ecological plasticity allowing these species to occupy a wide range of small, dark refuges.

A previous study detected mixing of two deeply split mtDNA clades (Clade I and Clade II) for Atlantic and Mediterranean populations of the medusozoan Pelagia noctiluca. The north hemisphere glaciations and the Messinian salinity crisis have been proposed as the two main biogeographic events related to the isolation between the Atlantic Ocean and the Mediterranean Sea. We tested if the splitting time between Clade I and Clade II of P. noctiluca was associated with one of these geological events. Our study was based on DNA sequence data of mitochondrial (COI and 16S ribosomal RNA) and nuclear (18S ribosomal RNA, internal transcribed spacer 1 and 5.8S ribosomal RNA) genes from populations of the Atlantic and Pacific Ocean and the Mediterranean Sea. The rise of the Isthmus of Panama was used to calibrate substitution rates for COI. This calibration was based on the detection of a shallow but significant genetic structure between P. noctiluca populations from the Pacific and the Atlantic Oceans. Considering our calibration for COI, we refute a possible origin of Clades I and II during the Messinian salinity crisis. Our estimates suggest the origin for a putative common ancestor of Clades I and II around 2.57 Ma (with 95% 2.91–2.22 HPD), roughly corresponding to the Gelasian stage of the early Pleistocene. These alterations include changes in the sea level and oceanic currents at the Strait of Gibraltar and other regions of the Mediterranean basin, and could explain the origin of the two P. noctiluca clades.

The upside-down jellyfish Cassiopea is a benthic scyphozoan, considered a non-indigenous invasive species in the Mediterranean, forming large blooms in eutrophic areas. Taxonomy of the genus Cassiopea is extremely difficult because morphological/meristic characters used are variable within the same species, overlapping among different species, and cryptic species have been identified by molecular markers; nine Cassiopea species are recognized on the basis of molecular study. Mediterranean records of Cassiopea have been ascribed to andromeda species on the basis of a hypothesized invasion pathway from the Suez Canal. In the current study, an analysis of the main morphological characters of the sampled Cassiopea jellyfish from Palermo (Tyrrhenian Sea) was carried out and subsequently, molecular analyses were performed by using COI barcode in order to identify the species. Molecular data were compared with published information in GenBank. Morphological characters were highly variable, but molecular analyses confirmed that Mediterranean Cassiopea specimens belong to andromeda species. Moreover, high values of sequence divergence were found between Mediterranean Cassiopea and the other C. andromeda from the Red Sea, Hawaii and Florida. These results lead to a discussion of possible explanations linked to life history features of the species. Two different explanations are proposed; the first is that Mediterranean C. andromeda, finding a suitable ecological niche good for colonization and proliferation, could have been isolated in Palermo Harbour. The second considers the possibility of multiple introduction events by human transport as demonstrated for other non-indigenous jellyfish; in this case Cassiopea genetic differences increased in the invaded area.

The syllid genus Anguillosyllis is relatively rare and mainly restricted to deep waters. The phylogenetic position of the genus was only recently inferred, while its reproductive mode, an important trait in the classification of the Syllidae, remains unknown. We describe herein our finding of one specimen of Anguillosyllis lanai with fragile egg capsules dorsally attached to some parapodial lobes, the first observation to date providing information about reproductive aspects of animals of the genus, and discuss possible evolutionary and phylogenetic implications of this finding.

Limpets and barnacles are important components of intertidal assemblages worldwide. This study examines the effects of barnacles on the foraging behaviour of the limpet Patella vulgata, which is the main algal grazer in the North-west Atlantic. The behaviour of limpets on a vertical seawall on the Isle of Man (UK) was investigated using autonomous radio-telemetry, comparing their activity patterns on plots characterized by dense barnacle cover and plots from which the barnacles had been removed. Limpet behaviour was investigated at mid-shore level, but two different elevations were considered. This experiment revealed a significant effect of barnacle cover on the activity of P. vulgata. Limpets on smooth surfaces spent a greater proportion of total time active than did limpets on barnacles. Movement activity was also greater in areas that were lower down in the tidal range. In general, limpets were either predominantly active during diurnal high or nocturnal low tides and always avoided nocturnal high tides. Individuals on barnacles at the higher elevation concentrated their activity during nocturnal low water. All the other groups of limpets (smooth surfaces on the upper level and all individuals on the lower shore) had more excursions centred around daylight hours with an equal distribution of activity between periods of low and high water. Inter-individual variability was, however, pronounced.

Recruitment of the limpet Patella ulyssiponensis was investigated in relation to the presence of living crustose coralline algae (CCA) in rocky-shore habitats. Juvenile limpets (≤10 mm maximum shell length) were counted in CCA-present and CCA-absent habitats, on three shores in SW Portugal during summer 2007 and winter 2009. Furthermore, the settling response of laboratory-reared larvae of P. ulyssiponensis to CCA-covered substratum, and bare-rock, was examined. Across the intertidal zone, we found a clear association between the distribution and abundance of juveniles and the presence of CCA. Although the presence of CCA was not an absolute requisite for juvenile occurrence, null juvenile densities were mostly recorded in CCA-absent areas. The highest juvenile densities (maximum of 64 individuals in 15 × 15 cm) were consistently found in CCA-dominated habitats, namely steep wave-exposed areas at low-shore and rock-pools. The hypothesis of CCA-enhanced settlement was not supported, as settlement intensities of laboratory-reared larvae were similar between chips of rock encrusted by CCA and chips of bare-rock. From the overall number of settlers onto CCA-encrusted rock chips, 51% were found in tiny pits lacking CCA. This was the first study of the settlement patterns of larvae of the genus Patella using naturally occurring rocky substrata. These results are preliminary and should be confirmed with choice-experiments and improved monitoring of the position of settlers. We suggest that CCA plays a role in the recruitment of P. ulyssiponensis, potentially promoting survivorship of early benthic stages, but possibly not enhancing settlement.

The morphology of the zoeal stages IX and XI of the shrimp Thalassocaris lucida is described and illustrated in detail from plankton specimens identified by barcoding of the mitochondrial 16S ribosomal RNA gene (sequence similarities 99.4–99.6%). The present study confirms the larval morphology of Thalassocaris, that shows distinct features within Pandaloidea: (1) carapace broad and dorsoventrally flattened, (2) coxal endite of maxilla with only one lobe, (3) basis of third maxilliped with a distal globose lobe. On the other hand, the funnel-shaped eyes, and the development with long series of larval stages of Thalassocaris indicate affinities with some genera of Pandalidae which corroborates the results of recent phylogenetic analyses in abandoning the family status of Thalassocarididae.

The population dynamics of shrimp Pleoticus muelleri was used as a model to verify if the trend of continuous reproduction periodicity, shorter body size and longevity, and early sexual maturity found in tropical regions is corroborated in upwelling regions. Shrimps were sampled in a region under the influence of upwelling (northern coast of Rio de Janeiro State, Brazil). Characteristics of bottom water were registered, and shrimps were measured (carapace length – CL) and classified by sex and gonadal development stages. Reproduction was seasonal, from September to December, and favoured by water mass intrusions of low temperatures and high chlorophyll concentrations. The greatest number of reproductive females preceded periods with the highest chlorophyll concentrations in the water column (cross-correlation; P < 0.05, lag (month) = −3, r = 0.50), suggesting greater developmental success of larval stage due to increase of food availability. Von Bertalanffy growth models resulted in asymptotic carapace length estimates of CL∞ = 40.21 mm and CL∞ = 36.78 mm for females and males, respectively. The reproductive and growth characteristics of the P. muelleri population studied herein were similar to that of populations from higher latitudes, demonstrating that the latitudinal pattern rule cannot be applied in regions influenced by an upwelling phenomenon.

The first record of the ophiuroid family Ophiohelidae from the Mediterranean Sea is reported. It consists of the description of the new record of Ophiomyces grandis from the Mallorca Channel seamounts in the Balearic Islands, western Mediterranean, where it shows high abundances. We present both the morphological description of the individuals collected and, for the first time, the cytochrome oxidase subunit I (COI) sequence of this species. The morphological traits of our specimens match the available descriptions of O. grandis. On the other hand, molecular analyses show a large genetic distance between O. grandis and Ophiomyces delata, the two species being very similar morphologically. Despite the high abundances of O. grandis reported here, previous surveys in the Mallorca Channel seamounts using ROV did not detect it, emphasizing the importance of beam trawl sampling to improving the biodiversity description of these geomorphological sea bottom features.

Thermal perception is crucial for the fitness of marine invertebrates in intertidal and shallow waters. TRPA1 is a non-selective cation channel that belongs to the TRP family with pivotal roles in initiating signal transduction of thermal perception. We investigated expression patterns of SiTRPA1 in different tissues (tube feet, coelomocytes, gonads and gut) of the sea urchin Strongylocentrotus intermedius. SiTRPA1 expression patterns under acute and long-term temperature stimuli were investigated in tube feet of sea urchins. In the present study, the highest expression of SiTRPA1 was detected in tube feet of S. intermedius. The SiTRPA1 expression level in tube feet were significantly 235.7-fold, 450.0-fold and 3299.7-fold higher than those in the coelomocytes, gonads and gut (df = 3, F = 47.382, P < 0.001). Expression levels of SiTRPA1 in the other tissues (coelomocytes, gonads and gut) were not significantly different (df = 3, F = 47.382, P = 0.972). There was no significant difference of SiTRPA1 expression among all groups in the acute temperature increase experiment (df = 4, F = 0.25, P = 0.902). In the acute temperature decrease experiment, the expression of SiTRPA1 showed no significant difference among all groups (df = 4, F = 1.802, P = 0.205). With long-term exposure (6 weeks) to different temperatures, SiTRPA1 expression in the low temperature group (10°C) was significantly higher than those in the high temperature (20°C) and the control groups (15°C) (df = 2, F = 9.57, P = 0.014). There was no significant difference of SiTRPA1 expression between the high temperature (20°C) and the control temperature (15°C) groups (df = 2, F = 9.57, P = 0.808). These results indicate that SiTRPA1 expression significantly responds to long-term low temperature but not to acute temperature decrease. The present study provides new insights on the distribution and temporal expression of TRPA1 in marine invertebrates after acute and long-term temperature stimuli.

An array of nano-scale protrusions, called the nipple array, is found on the body surface of various invertebrates, and this structure is believed to decrease light reflectance and water wettability on the surface in the terrestrial environment. However, its potential functions have not been well studied in aquatic environments. Clavelina spp. are colonial ascidians that have the nipple array on their integumentary matrix (i.e. tunic). We examined the physical properties on the surface of the tunic of C. cyclus and C. obesa, such as hardness, wettability and refractive indices, to evaluate the functional importance of this structure. The tunic cuticle of both species was covered with the nipple array, and the cuticle of C. cyclus was bent into folds forming parallel plications. The Clavelina tunic was very soft and had high bubble- and oil-repellency. The refractive-index deviation between the tunic and seawater was 0.07–0.095 for 589-nm light (D-line). Rigorous coupled wave analysis (RCWA) showed that the nipple array slightly reduced reflectance on the surface and the parallel plications reduced the reflectance still more. The nanoimprinted plates imitating the parallel plications have higher bubble repellency and lower reflectance than the flat plates. These findings support the functional importance of the plications as well as the nipple array.

Behavioural plasticity in animals is tested whenever competitive interactions for space and/or food resources occur between wildlife and human activities. This study uses the concepts of operational and non-operational interactions between bottlenose dolphins (Tursiops truncatus) and artisanal fisheries in Alvarado, to search for differences in behaviour, age structure and group size. We conducted 20 surveys between 2015 and 2016, and recorded 64 groups by means of scan sampling from either a research boat or a fixed vantage point. Average dolphin group size was small (${\bar{\rm x}}$ = 3.2, SD = 2.2 individuals) and fewer individuals were commonly present when interaction with fisheries occurred. Operational interactions were defined within the first 30 m and occurred mainly with lone individuals (54% recorded from the lighthouse and 82% during surveys); this benchmark also accounted for higher frequencies in locomotion and feeding (χ2 = 83.10; df = 7; P < 0.001). We found a higher rate of new behavioural events for dolphin groups furthest from human activities, as well as a decrease in behaviours that imply greater body exposure as dolphins approach the fishing spots. Age structure and dolphin group size were not different during and in the absence of interaction with fisheries, but most interactions involved male dolphins. Behavioural variations in the dolphins' repertoire are likely a strategy to reduce the risk of injuries or death when interacting with human activities; these dolphins seem to have habituated to or at least tolerate fishing activities within the study area, possibly constituting a sex-biased pressure.

The food habits of the South Pacific hake (Merluccius gayi) from Ecuadorian waters were studied by analysing 232 stomachs of specimens ranging from 23.4–83.1 cm in total length (TL). Fish was the most important prey group (Alimentary Index, %AI = 94), Ctenosciaena peruviana being the most represented prey species (%AI = 62.17). PERMANOVA analysis showed dietary differences between the smallest individuals (class I < 30 cm TL) and the largest (class IV 40–45 cm TL; class V ≥ 45 cm TL). In addition, spatial differences in dietary composition were found between the three sampled regions (Manabí, Santa Elena and Guayas). The results of this study indicate that the South Pacific hake is an opportunistic predator feeding on a wide variety of vertebrate and invertebrate organisms.

To investigate the response of the fish community structure to a natural disturbance in their habitat, fish abundance, biomass and species composition were analysed in relation to temporal variability of environmental conditions in a seagrass Zostera marina bed. A total of 3024 fishes belonging to 46 taxa (22 families) were collected by quantitative sampling for 10 years from 2007 to 2016 in the Seto Inland Sea, south-western Japan. Seagrass shoot density decreased to less than 1/20 of its original density after disappearance of vegetation caused by heavy rain in the autumn of 2011 and the area did not recover for the next five years. In order to analyse temporal changes of fish community, the fishes were divided into three groups depending on their habitats or lifestyles: pelagic or migratory species (PM), sand or mud bottom-associated species (SM) and seagrass (Z. marina) – or substrate (rocky bottom including macrophytes) – associated species (ZS). Multiple regression analysis showed seagrass shoot density had the most significant effect on biomass of ZS among the three groups, with higher fish biomass under higher seagrass shoot density. Fish community composition changed after the disappearance of the seagrass vegetation coverage with an increase in abundance of SM during the five years of the post-disturbance period. Seagrass vegetation was concluded to affect temporal change of fish community structure through a stronger influence on fish species that are more dependent on seagrass beds as habitat.

Atlantic bonito, Sarda sarda, is one of the representatives of the Scombridae family in the Adriatic Sea. Larvae and juveniles have been found and described in the area, but no information has been published regarding adults spawning in the Adriatic Sea. To explore the strong possibility that Atlantic bonito are reproducing in the Adriatic Sea, 122 specimens of adult Atlantic bonito were collected from a purse seine net ‘palamidara’ over four seasons in 2017. The fork length of the analysed specimens varied from 37.5 to 60.8 cm, with a mean of 48.83 ± 5.59 cm, while total body weight varied between 742.68 and 3102.59 g, with a mean value of 1700.49 ± 543.82 g. Gonadosomatic index values showed an increasing trend from autumn (0.123 for males, 0.897 for females) until spring, while in the summer, they reached their maximum values (3.609 for males, 5.604 for females). This trend was also confirmed by histological and macroscopic analyses of gonads, which suggested that the Atlantic bonito spawning season is in the spring-summer in the Adriatic Sea. Hence, this confirms that this species is spawning in the Adriatic Sea.

This study investigated the diet of longnose stingray Hypanus guttatus in the tropical waters of north-eastern Brazil. Samples were obtained from monthly sampling of artisanal fisheries from August 2007 to July 2008. A total of 258 specimens were examined, 127 females and 131 males, and stomach contents analysis suggested H. guttatus to be a generalist and opportunistic predator feeding on the most available prey in the environment. There was no significant difference in the diet composition of males and females, or between seasons. However, an ontogenetic dietary shift was observed with larger individuals having an increased proportion of molluscs in the diet, whilst smaller individuals predated primarily on small crustaceans.