The evolution of symbiotic relationships involving reef corals has had much impact on tropical marine biodiversity. Because of their endosymbiotic algae (zooxanthellae) corals can grow fast in tropical shallow seas where they form reefs that supply food, substrate and shelter for other organisms. Many coral symbionts are host-specific, depending on particular coral species for their existence. Some of these animals have become popular objects for underwater photographers and aquarists, whereas others are hardly noticed or considered pests. Loss of a single coral host species also leads to the disappearance of some of its associated fauna. In the present study we show which mushroom corals (Scleractinia: Fungiidae) are known to act as hosts for other organisms, such as acoel flatworms, copepods, barnacles, gall crabs, pontoniine shrimps, mytilid bivalves, epitoniid snails, coralliophilid snails, fish and certain types of zooxanthellae. Several of these associated organisms appear to be host-specific whereas other species are generalists and not even necessarily restricted to fungiid hosts. Heliofungia actiniformis is one of the most hospitable coral species known with a recorded associated fauna consisting of at least 23 species. The availability of a phylogeny reconstruction of the Fungiidae enables comparisons of closely related species of mushroom corals regarding their associated fauna. Application of a phylogenetic ecological analysis indicates that the presence or absence of associated organisms is evolutionarily derived or habitat-induced. Some associations appear to be restricted to certain evolutionary lineages within the Fungiidae, whereas the absence of associated species may be determined by ecomorphological traits of the host corals, such as coral dimensions (coral diameter and thickness) and polyp shape (tentacle size).

The composition and structure of a molluscan assemblage inhabiting an outcrop with a coralligenous community was studied in southern Spain. A total of 117 molluscan species were identified, with gastropods as the dominant group. Calyptraea chinensis was the dominant species and the family Conidae presented the highest number of species. The Shannon–Wiener diversity index and the Evenness showed non-significant changes between cold and warm months, displaying high values (~4 bits and ~0.8 bits respectively). Some of the dominant and/or frequent species are strictly associated with coralligenous-building organisms, such as Neosimnia spelta with gorgonians. Regarding trophic guilds, carnivores are the dominant group, followed by filter feeders due to the high abundance of C. chinensis. Regarding biogeographical distributions, most of these species (<95%) are widely distributed in European waters, the number of strictly Mediterranean species being very low. The Alboran Sea represents the distributional limit towards the Mediterranean for some species found in this bottom, such as the Atlantic Bela powisiana. Rocky–coralligenous bottoms are scarce in the western Alboran Sea but support a high species richness molluscan assemblage, displaying higher diversity values than the surrounding soft bottoms and increasing the biodiversity at local scale. This high biodiversity is partly explained by the coexistence of different taxa with contrasting biogeographical affinities promoted by the geographical location of the area. Due to this, conservation efforts should be required to protect this stretch of coastline where one of the most biodiverse invertebrate assemblages along the European coasts can be found.

The study aims to provide the first detailed account of the diversity and composition of the community associated with biogenic reefs formed by serpulid worms. Ten reefs (aggregations of calcareous Serpula vermicularis tubes), spanning a broad size-range, were collected from Loch Creran, Scotland, a Special Area of Conservation designated principally for the protection of its biogenic reefs. Total faunal abundance was strongly linearly related to reef weight, whilst taxon richness exhibited a hyperbolic relationship with reef size. 278 taxa were recorded from the ten reefs, with a reef of 0.1 m2 area supporting 163 taxa and 12756 individuals, which appears to represent considerable augmentation of diversity and abundance for sedimentary areas of the loch where the reefs occur. The reef assemblage was dominated by polychaetes (94 taxa), molluscs (70 taxa) and crustaceans (45 taxa). Species composition varied with reef size, although reefs greater than 25 cm width exhibited relatively little variation. In comparison with other biogenic polychaete habitats, S. vermicularis reefs appear to support a highly diverse community, which exhibits a high degree of similarity with that found in association with aggregations of the horse mussel, Modiolus modiolus. The presence of the Connemara clingfish, Lepadogaster candollei, rarely recorded at such a northerly latitude, on several reefs, indicates that the reef habitat may provide a stronghold for this species at the edge of its biogeographical range.

Aquarium systems allow technically sophisticated experiments that promise new opportunities to answer urgent questions about reef coral biology, for instance assessing the responses to decreasing environmental pH and/or increased temperatures. Over recent years, long-term culture and (predominantly asexual) propagation of corals has become possible in such systems. At present however, only limited data are available that clarify whether or not responses of the coral holobiont are dominated by the acclimatization to life in captivity or continue to reflect, for example, taxonomic differences seen in nature. We studied the diversity of the symbiotic algae in corals and sea anemones after long-term aquaculture by analysis of their small subunit (SSU) ribosomal DNA gene. A field sample of Acropora clathrata from the Arabian Gulf which was used as a control contained clade C zooxanthellae. The aquarium corals also harboured clade C symbionts, but sequencing of the SSU DNA suggested that the analysed animals host different subclades. A prevalence of clade C is also found among corals from the Indo-Pacific region, the origin of most of the aquarium samples. An individual of the temperate sea anemone Anemonia sulcata (viridis) contained clade A symbionts, similar to those found in nature, even after nearly 10 years of co-culture with sea anemones (Entacmaea quadricolor) and corals hosting clade C symbionts. The results indicate that the specific host–symbiont association occurring in nature appears to persist over >2 years timescales in captivity, with no mixing of symbionts between hosts maintained in the same aquarium or apparent selection of stress-tolerant symbiont strains such as clade D.

Pacifigorgia marviva, a new shallow-water species of the family Gorgoniidae, was found in Coiba National Park, Pacific Panama at 35–40 m depth. It is characterized by having white to cream, small, erect colonies composed of 1–4 fronds, stems short or absent network irregular and open without fan midribs, and polyp mounds slightly raised and sparsely distributed. All sclerites are colourless. Coenenchymal sclerites mostly composed of long spindles reaching up to 0.25 mm in length, and long and thin anthocodial rods, up to 0.16 mm in length. Morphological characters are analysed and illustrated. Scanning electron microscopy was used for sclerite study. The new species is herein described and compared with other similar species reported from the eastern Pacific. Pacifigoria marviva increases the number of Pacifigorgia species to 35; 20 in Panama representing 57% of the genus in the eastern Pacific, followed by Costa Rica and Ecuador with 14 and 10 species, respectively.

The annotated literature of Blastomussa loyae Head, 1978, together with the comparison of descriptions and figures by various authors, new observations in the field, collected and figured samples from the northern Red Sea provide the basis to regard the species as valid and distinct from B. merleti (Wells, 1961).

Light is one of the most important abiotic factors influencing the (skeletal) growth of scleractinian corals. Light stimulates coral growth by the process of light-enhanced calcification, which is mediated by zooxanthellar photosynthesis. However, the quantity of light that is available for daily coral growth is not only determined by light intensity (i.e. irradiance), but also by photoperiod (i.e. the light duration time). Understanding and optimizing conditions for coral growth is essential for sustainable coral aquaculture. Therefore, in this study, the question was explored whether more light (i.e. more photons), presented either as irradiance or as light duration, would result in more growth. A series of nine genetically identical coral colonies of Galaxea fascicularis L. were cultured for a period of 18 weeks at different light duration times (8 hours 150 μE m−2 s−1:16 hours dark, 12 hours 150 μE m−2 s−1:12 hours dark, 16 hours 150 μE m−2 s−1:8 hours dark, 24 hours 150 μE m−2 s−1:0 hours dark) and different irradiance levels (8 hours 150 μE m−2 s−1:16 hours dark, 8 hours 225 μE m−2 s−1:16 hours dark and 8 hours 300 μE m−2 s−1:16 hours dark). Growth was determined every two weeks by measuring buoyant weight. Temperature, salinity and feeding levels were kept constant during the experiment. To detect possible acclimation of the corals to an increased light duration, rates of net photosynthesis and dark respiration were measured, hereby comparing coral colonies grown under an 8:16 hours light (150 μE m−2 s−1):dark cycle with corals grown under a 16:8 hours light (150 μE m−2 s−1):dark cycle. No increase in growth was detected with either increasing photoperiod or irradiance. Continuous lighting (24 hours 150 μE m−2 s−1:0 hours dark) resulted in immediate bleaching and the corals died after 14 weeks. Hourly photosynthetic rates were significantly reduced in the 16 hour light treatment compared to the 8 hour light treatment. As a result, daily net photosynthetic rates were not significantly different, which may explain the observed specific growth rates. Acclimation to photoperiod duration appeared neither to be mediated by changes in chlorophyll-a concentration nor zooxanthellae density. Based on the results of this study, we can conclude that the enhancing effect of light on coral growth is not only a matter of photons. Obviously, the availability of light was not limiting growth in these experiments and was probably in excess (i.e. stressful amounts). Other factors are discussed that play a role in determining growth rates and might explain our results.

In order to determine optimal feeding regimes for captive corals, prey capture by the scleractinian coral Galaxea fascicularis was determined by measuring clearance of prey items from the surrounding water. Colonies of G. fascicularis (sized between 200 and 400 polyps) were incubated in 1300 ml incubation chambers. Nauplii of the brine shrimp Artemia sp. were used as the prey item. A series of incubation experiments was conducted to determine the maximal capture per feeding event and per day. To determine maximal capture per feeding event, total uptake of nauplii after one hour was determined for different prey item availabilities ranging from 50 to 4000 nauplii per polyp. To determine maximal capture per day, the corals were subjected to four repetitive feeding events at three different prey item densities (50, 100 and 150 nauplii per polyp). Alongside these quantitative experiments, it was tested to what extent the feeding response of corals is triggered by chemical cues. One hour after food addition, extract of Artemia nauplii was added to the incubation chambers to test its effect on subsequent prey capture rates. In all experiments, prey capture was expressed as the number of nauplii consumed per coral polyp. Total capture of Artemia nauplii by G. fascicularis after a single feeding event increased linearly up till a prey item availability of 2000 nauplii per polyp. Maximal capture per feeding event was estimated at 1200 nauplii per polyp, which is higher than rates reported in previous studies. It became apparent that at high densities of Artemia nauplii, the clearance rate method does not discriminate between active capture and passive sedimentation. Repetitive feeding with 50 nauplii per polyp resulted in a constant total prey capture per feeding event. At a supply of 100 nauplii per polyp, total capture decreased after the first feeding event, and remained constant during the subsequent feeding events at a level comparable to the lower food availability. However, at a supply of 150 nauplii per polyp, total capture per event was higher throughout the entire four-hour incubation period, which obfuscates an accurate estimation of the maximal daily food uptake. In all incubations, a decrease in capture efficiency was observed within the course of the feeding event. In all repetitive feeding experiments, capture efficiency increased immediately upon addition of a new batch of food. This increase in efficiency was not caused by a priming effect of extract of Artemia. The inconsistencies in the data show that estimates of prey capture based on clearance rates should be interpreted with caution, because this method does not take into account potential dynamics of prey capture and release.

Improved coral cultivation will facilitate the reduction of wild harvesting, reef restoration, preservation of biodiversity, and the use of corals as model experimental organisms. In this study, we examine species-specific responses in growth and survival of corals from the effects of light, water motion and artificial (i.e. non-living aquarium trade) food supplements. Three species representing distinct, diverse and abundant coral genera were chosen (Montipora capitata(Mc), Porites compressa (Pc) and Pocillopora damicornis (Pd)) for three experiments to examine: (1) the interaction of water flow and light on growth and survival of Mc and Pc; (2) the effects of artificial foods on Mc, Pc and Pd; and (3) the effects of increasing dosage of artificial foods in an open system on Mc and Pc. Pc thrived at the highest light levels with low flow, while Mc exhibited bleaching and reduced growth in the same conditions and grew best in shaded treatments. High constant flow (~11 cm s-1) resulted in slightly less overall growth than low constant flow (~4 cm s-1). Some artificial foods resulted in a significant increase in growth in Mc and Pd, but not in Pc. These combined results suggest that Mc may be more heterotrophic than Pc. This study illustrates that each species has unique requirements for optimal growth conditions that can be determined by relatively simple and low cost experiments, but that ideal conditions for one species might not be generalized to others.

Four species of giant clams, Tridacna maxima, T. squamosa, T. derasa and T. crocea, were cultured in outdoor raceways for 364 days at the Waikīkī Aquarium and the Oceanic Institute on the island of O‘ahu, Hawai‘i, USA.  Growth of each species was compared among individuals grown with and without supplemental phytoplankton feeding, and directly on the substrate or mounted on concrete plugs in low pH, high nutrient seawater.  Among clams cultured with and without supplemental phytoplankton (Chaetoceros spp.), feeding resulted in significantly lower mortality in all species but T. deresa, whereas growth was significantly higher among fed clams for all species except T. squamosa. Tridacna derasa showed roughly a three-fold increase in growth when fed (88.5 g ± 4.4 SD) than when unfed (26.0 g ± 2.1 SD), whereas T. maxima growth was substantially lower, but nearly 10-fold greater in response to feeding (9.0 g ± 1.9 SD). The overall mortality rate of juvenile clams was significantly lower in the fed (44.4 ± 10.0%) than the unfed (71.8 ± 9.6%) trials, with the greatest effect observed in mortality of T. maxima (fed 15% versus unfed 80%) and T. squamosa (fed 65% versus unfed 95%). None of the T. squamosa remained on concrete plugs for the duration of the experiment. Among the remaining three species, there was no difference in either wet weight or shell length for T. maxima and for wet weight only in T. derasa on (186.5 g ± 16.1 SD) and off (147.0 g ± 6.0 SD) the concrete plugs.  In contrast, T. crocea had significantly greater shell growth off the plugs (14.3 mm ± 1.0 SD versus 8.5 mm ± 1.7 SD) but significantly greater gain in wet weight on the concrete plugs (26.3 g ± 1.5 SD versus 58.5 g ± 2.5 SD).  The seawater wells used for this study are well characterized with elevated levels of inorganic nutrients and higher pCO2 relative to tropical ocean waters, roughly approximating predictions for future oceanic conditions under IPCC IS92a emission scenarios. In comparison to previous studies in natural seawater, T. derasa had a significantly higher shell growth rate in the high-nutrient, low-pH well water.  In contrast, T. maxima and T. squamosa had significantly lower growth rates in low pH, whereas growth of T. crocea was not significantly different between low pH and ambient seawater.  These experiments demonstrate species-specific differences with each treatment, which cautions against making broad generalizations regarding the effects of substrate type, feeding effects, nutrient enrichment, and ocean acidification on tridacnid culture and survival.

The effect of increased levels of suspended sediment on fertilization success in the scleractinian coral Pectinia lactuca was investigated in a laboratory experiment following a mass coral spawning event on reefs off Singapore. Egg–sperm bundles were collected from tank-spawned coral colonies collected from the field several days prior to the anticipated mass spawning. Eggs and sperm from each colony were separated and distributed systematically across replicated treatments (N = 9) with three concentrations of fine suspended sediment. Spawning and embryo development in Pectinia lactuca followed a pattern similar to other scleractinian coral species. There was a significant effect of increased suspended sediment concentration on fertilization success (P < 0.05). Both high- (169 mg l−1) and medium- (43 mg l−1) suspended sediment treatments decreased fertilization success compared to controls. These results imply that increased turbidity levels (whether chronic, such as in the waters around Singapore, or short-term, caused by a dredging operation)—when coinciding with the coral spawning season—may affect the reproductive success of corals and compromise coral recruitment and recovery of degraded reefs.

Knowledge about factors that are important in coral reef growth help us to understand how reef ecosystems react following major anthropogenic and environmental disturbances. In addition, they may help the industry understand how aquarists can improve the health of their corals. I have studied environmental and climate effects on corals on fringing reefs in Jamaica. Radial growth rates (mm/yr) of non-branching corals calculated on an annual basis from 2000–2008 showed few significant differences either spatially or temporally along the north coast, although growth rates tended to be higher on reefs of higher rugosity and lower macroalgal cover. I have also reconstructed recruitment patterns, using growth modelling, for non-branching corals at sites on the north coast of Jamaica near Discovery Bay, and near Kingston Harbour, on the south coast. For all the sites, recruitment of non-branching corals was lowered due to hurricanes or severe storms. For 1560 non-branching corals at sites along the north coast of Jamaica, from Rio Bueno to Pear Tree, there was a significant difference in estimated coral recruitment in years when there were no storms or hurricanes by comparison to years when storms and hurricanes impacted the area. For 347 non-branching corals at sites in the Port Royal Cays on the south coast, there was a significant difference in estimated coral recruitment in years when there were no storms or hurricanes by comparison to years when storms and hurricanes impacted the area. Interestingly, recruitment of Siderastrea siderea on to the side of the ship channel at Rackham's Cay (~100 m from the path taken by large ships) outside Kingston Harbour had been consistent since its construction. These findings have important implications for better understanding the impacts of tropical storms on coral reefs and for aquarists to better maintain coral reef species in artificial environments.

In order to improve the methodology for growing and maintaining corals in captivity, a consortium of European zoos, aquaria and academia executed a four-year public/private collaborative research and innovation project (CORALZOO) on the breeding and husbandry of stony corals. CORALZOO comprised the following topics: (1) sexual and asexual breeding of corals in captivity, including techniques for propagation, feeding and induction of natural coral colony morphogenesis; and (2) coral husbandry: development of generic bioassays to evaluate biotic and abiotic husbandry parameters and to monitor coral health, elaboration of methods for identification and treatment of coral diseases and optimization of transport and acclimation procedures. The results of this project are reviewed.

Molecular biological methods including genomic and proteomic approaches hold a specific promise to provide new insights into the stress physiology of corals. However, to fully exploit the power of these techniques, aquarium setups are required that allow biological assays under tightly controlled laboratory conditions. Here, details are provided about the successful development of a closed coral mesocosm at the National Oceanography Centre, Southampton. The system can be operated without access to natural seawater and allows long-term observations and experimental studies of reef corals. The individual experimental tanks allow the corals to be exposed, for example, to different light and/or temperature conditions without the need to disconnect them from the system.

The Aegean Sea, due to the complexity and variety of morphological features, bathymetry, hydrological, hydrodynamic features and climatic characteristics, offers a unique opportunity for monitoring the spreading and/or invasion of alien biota. It is known that the establishment of warm/tropical marine alien species is related mainly to the increase in sea temperature. A significant increase in aliens' number along the southern Aegean (Dodecanese) coasts has been documented in the last twenty years, while their arrival has produced evident changes in coastal ecosystem composition and function. Although the study area acts as a crossroad for tropical alien species introduction in the eastern Mediterranean Sea, a direct attempt to link temperature alterations with new alien species arrivals has not been performed. Satellite and in situ derived marine temperature data showed that the study area has gone through a remarkable warming, while the link between global temperatures and regional ones revealed that this warming is not a local phenomenon but part of global climate trends. Examining relationships between new alien species arrivals data since 1929 against global temperatures, it is shown that their introduction rate parallels the significant increase of marine temperatures. The association of alien introductions with marine water warming, as well as potential effects on ecosystem functioning of selected species is discussed.

Many reef coral diseases have been described affecting corals in the wild, several of which have been associated with causal agents based on experimental inoculation and testing of Koch's postulates. In the aquarium industry, many coral diseases and pathologies are known from the grey literature but as yet these have not been systematically described and the relationship to known diseases in the wild is difficult to determine. There is therefore scope to aid the maintenance and husbandry of corals in aquaria by informing the field of the scientifically described wild diseases, if these can be reliably related. Conversely, since the main driver to identifying coral diseases in aquaria is to select an effective treatment, the lessons learnt by aquarists on which treatments work with particular syndromes provides invaluable evidence for determining the causal agents. Such treatments are not commonly sought by scientists working in the natural environment due the cost and potential environmental impacts of the treatments. Here we review both wild and aquarium diseases and attempt to relate the two. Many important aquarium diseases could not be reconciled to those in the wild. In one case, however, namely that of the ciliate Helicostoma sp. as a causal agent of brown jelly syndrome in aquarium corals, there may be similarities with pathogenic agents of the wild coral diseases, such as white syndrome and brown band syndrome. We propose that Helicostoma is actually a misnomer, but improved understanding of this pathogen and others could benefit both fields. Improved practices in aquarium maintenance and husbandry would also benefit natural environments by reducing the scale of wild harvest and improving the potential for coral culture, both for the aquarium industry and for rehabilitation programmes.

The submerged coral reefs of Brunei, little-impacted by human activity and characterized by high live coral cover, have no recorded history in recent decades of the presence of the crown-of-thorns (COT), Acanthaster planci. This sea star, first recorded on Brunei reefs in 2008, attained outbreak densities in 2010. At Littledale Shoal its impact on corals at permanent transect sites has been quantified; mean live coral cover reduced by half from 2006 to 2010 due predominantly to predation. Line intersect transect data confirm a predisposition for tabular Acropora species, a prominent feature at this site, although other scleractinian taxa were also predated. Other regional outbreaks are reviewed, including episodes, and their timing, within the neighbouring Coral Triangle (CT). Mounting evidence implicates nutrient-enhanced increases in primary production as a primary cause of COT outbreaks. However, this stands in contrast with a report of global oceanic phytoplankton decline in the past century, and there is little evidence of such a link in the CT, even though this region is characterized by high precipitation, erosional plumes and seasonal upwelling-associated phytoplankton blooms. Furthermore, until survivorship and competency for a wider spectrum of mass-spawned invertebrate planktotrophs in relation to elevated phytoplankton densities is better understood, such evidence, suggesting release from food limitation as the principal cause of enhanced COT recruitment, should be interpreted with caution.

In the Colombian Caribbean Sea a shallow water commercial shrimp fishery has been developed, targeting mainly Farfantepenaeus notialis. Yet, similarly to so many fisheries around the world, the exploitation of this shrimp is not regulated, and a significant depletion has resulted. This study investigates new fishing areas, exploring the poorly understood deep-sea habitats in the Colombian Caribbean Sea, to determine the potential for a viable deep shrimp fishery, studying their abundance and spatial distribution. We found high abundances for giant red shrimp (Aristaeomorpha foliacea) and royal red shrimp (Pleoticus robustus), both important commercially. The higher biomass of these two deep-sea shrimp species were found mainly in the northern zone of the Colombian Caribbean Sea, where the local oceanography is modulated by the seasonal upwelling with high productivity. The size-structure following depth strata showed that A. foliacea increase in size with the depth and the contrary for P. robustus. The majority of adult individuals in these two deep-sea shrimp species reflect the non-fished populations in the study area. However, more scientific assessment is necessary to determine life cycle population parameters of deep-sea shrimps and associated biodiversity before initiating a new commercial shrimp fishery.

Parapenaeopsis coromandelica shrimp populations along the western coast of Sri Lanka have supported coastal trawling for the last hundreds of years. Two non-overlapping adjacent fishing grounds (Hendala and Negombo) sustain different fishing intensities. In order to obtain information on the population structure and genetic diversity of P. coromandelica in these two regions, differences in length–weight relationships, growth, spawning seasons, sex-ratios, gonadosomatic index, length at 50% maturity (L50) and sequence variation of the mitochondrial cytochrome oxidase subunit I were examined. Significant differences in population biology and genetic diversity were revealed from the two fishing grounds. Samples of Hendala showed lower L50 and genetic diversity which are considered as potential effects and symptoms of extensive selective harvesting. Further, the shrimps' behaviour seems to be triggering the separation through low mixing of individuals at the two fishing grounds resulting in significant divergence based on haplotype frequencies. Management of P. coromandelica should consider the revealed biological and genetic evidences on existence of two sub-populations/stocks together with a routine monitoring of genetic effects due to harvesting.