The occurrence of most species is linked to the distribution of specific combinations of environmental variables that define their occupied niche. As a result, the relationship between environmental variables and species occurrence can be used to model species distribution. However, when collecting data to construct such models, it is preferable to ensure that the survey coverage is representative of all available habitat combinations within the area as a whole to ensure that the model does not under- or over-estimate the actual species distribution. By using multi-variate statistical techniques, a habitat representativeness score (HRS) can be calculated to provide an objective assessment of whether a specific survey coverage will collect (or has collected) data that are representative of all available habitat variable combinations in an area. To demonstrate this approach, HRSs calculated using principal component analysis were used to assess the minimum number of evenly-spaced parallel north–south surveys required to adequately survey two study areas with differing levels of environmental heterogeneity for all available combinations of four habitat variables. For the more environmentally homogeneous study area, the HRS suggests that for this survey design a minimum of five evenly-spaced parallel transects, covering around 5% of the study area, would be required to obtain representative survey coverage for these four variables. However, for the more heterogeneous study area, at least eight evenly-spaced parallel transects, covering around 9% of the study area, would be required. Therefore, for a given survey design, more survey effort is required to obtain a representative survey coverage when the survey area is more variable. In both cases, conducting fewer surveys than these minimum values would produce an unrepresentative data set and this could potentially lead to the production of species distribution models that do not accurately reflect the true species distribution.

Seasonal and spatial variations in the composition and relative contribution of the harpacticoid species in the Mondego estuary (western Portugal) were studied based on a monthly sampling along a salinity gradient. These benthic harpacticoids were collected in the water column by means of a 63-µm plankton net. The influence of hydrological parameters (temperature, salinity, oxygen dissolved concentration, pH, turbidity, chlorophyll-a, total suspended solids and nutrient concentrations) was analysed by means of a redundancy data analysis. In addition, this is the first study to provide a checklist of benthic harpacticoids from this estuary. In total, 13 species plus six species not yet identified but known to belong to the genus Canuella, Microsetella, Ectinosoma, Mesochra, Harpacticus and Parapseudoleptomesochra were identified. Copepodites and adults of Euterpina acutifrons and Paronychocamptus nanus were most abundant in this harpacticoid community. While P. nanus dominated in winter and spring at upstream stations, E. acutifrons dominated more downstream. Although this species occurred along the whole salinity gradient, its highest abundances were found in the north arm of the estuary, except in autumn. This distribution may be due to the adaptability of E. acutifrons to different environments and the intermediate position between marine and estuarine conditions assigned to this species. Paraleptastacus cfr. spinicauda showed a relative occurrence of 5–10% in all stations, except at the mouth of the estuary (M). Tachidius discipes was found in low densities in Mondego estuary in spite of the large numbers of copepodites of this species in the southern arm, characterized by a high level of total suspended solids. The northern arm of the estuary was characterized by a higher numerical occurrence of harpacticoid organisms throughout the study years, with the higher densities towards the freshwater part (upstream areas). Canuella sp., Ectinosoma sp. (copepodite), Ectinosoma melaniceps, Leptocaris brevicornis, Phyllognathopus viguieri, Microsetella norvegica (copepodite) and Macrosetella gracilis (copepodite) were considered rare species. Nonetheless harpacticoid species were represented by a higher number of adults in the northern arm, and juveniles in the southern arm.

The marine amphipod fauna of Tunisian shallow water was studied during 2003 to 2009. In this paper, we report—for the first time—the presence of two lessepsian amphipod species Elasmopus pectenicrus and Stenothoe gallensis from the south-east Tunisian coast.

Even if artificial reef studies heavily refer to the distinction between resident and transient species, there is still no widely-shared available method to distinguish objectively these two groups. Such an absence makes any comparison between studies difficult. This study aims to test whether the four objective distinction methods successfully applied to a 21-year-long time-series on fish assemblage in an English estuary may be as successful when applied to marine artificial reefs. For such a purpose, we tested each distinction tool separately with reference to four different artificial reef fish assemblage datasets. Three of them were drawn from the literature. Results indicate that none of these tools, used either individually or collectively, provide an efficient solution to distinguish resident species for the four datasets considered. We suggest that one of the major reasons for this failure may lie in the relative sampling size. Nonetheless, as these four datasets are representative of the datasets generally reported in the literature, tools capable of distinguishing reliably and efficiently resident from transient species along artificial reefs have yet to be developed. However, such a development requires fish residence to be previously and accurately defined by artificial reef scientists and managers.

A large (100 km) rocky coast intertidal was sampled several times (from 2004 to 2006) to assess the affection degree of invertebrate assemblages impacted by a continuous oil spill. Twelve locations and two intertidal heights were selected along the coast representing two spatial scales (kilometres and tens of metres). Univariate and multivariate analyses of variance were used to test whether faunal assemblages exposed to different intensities of oil disturbance differ in terms of diversity, total cover, key species cover and trophic guilds. Whereas no significant differences in midshore assemblages were noted, the low intertidal zone exhibited comparatively lower abundance values of the limpet Patella ulyssiponensis at worst affected sites. Besides, a generalized increasing diversity trend was found in the low intertidal from 2004 to 2006. Natural variability of communities is also discussed as the cause of the differences we observed. With respect to spatial and temporal scales of variation, mid- intertidal communities showed a more consistent structure, while lowshore assemblages were markedly heterogeneous in practically all the variables measured.

Dynamics of Synechococcus (Syn), Prochlorococcus (Pro) and picoeukaryotes (Euk) was studied at 92 stations in the Pearl River Estuary and adjacent shelf waters in the winter of 2006 using flow cytometry. The average cell abundance of photosynthetic picoplankon (Pico) was 104 cells/ml. Picoeukaryotes was the dominant group in the inner estuary where Pro was absent. Synechococcus was dominant in the coastal and open waters. The proportion of Pro was higher in the open than in the coastal waters. The change of Pico community structure from the inner estuary to the open waters is related to the changes in hydrochemical dynamics. The vertical variations in the abundance and community composition of Pico were not significant. The abundances of Pro and Syn were positively correlated with temperature, salinity and pH, whereas they were negatively correlated with dissolved oxygen (DO), suspended sediment concentrations (SSC) and nutrients (nitrogen, phosphorus and silicon) concentrations. But the correlations between %Euk (as of total pico) and these environmental factors were opposite to those between the abundance of prokaryotic cells (Pro and Syn) and the environmental factors. %Euk had significant negative correlations with temperature, salinity and pH, and positive correlations with DO, SSC and nutrients. There were differences in the niches between prokaryotic cells and picoeukaryotes. Prochlorococcus and Syn were dominant in the warm waters with high salinity, low SSC and low nutrient concentrations, while %Euk was higher in the cold waters with low salinity, high SSC and high nutrient concentrations. Results of principal component analysis and regression analysis indicated that the relationship between the abundances of Pico and the environmental factors was a compound function (y = b0(b1)x), and that between the abundances of Pro, Syn or %Euk and the environmental factors was a linear function.

Errina aspera is the only species belonging to the family Stylasteridae known from the Mediterranean Sea. The distribution of this species includes the Messina Strait, the Gibraltar Strait and the Atlantic coast of Morocco. In spite of the taxonomic and biogeographical importance of this species, no studies were conducted on its population structure in the Messina Strait. Here we report a study carried out with the aid of a ROV on a horizontal transect 350 m long at a depth comprised between 83 and 105 m where an extremely dense population of this stylasterid (101.4 ± 13.3 m−2) was recorded. The main components of the benthic community other than E. aspera are the coralline alga Lithothamnion philippii and the white zoanthid Epizoanthus sp. The colonies of E. aspera have a height ranging between 1.2 and 18.8 cm (4.1 ± 0.1 cm on average); they generally show a bi-dimensional, fan shaped morphology, but three-dimensional, brush-like specimens are also observed. The size–frequency distribution of the colony height is unimodal with a mode in the classes of 3–5 cm and a long tail of rare large colonies suggesting that the current may act as a limiting factor for the colony growth. The association with the gastropod ovulid Pedicularia sicula is confirmed.

Hydroids in Kongsfjorden, Svalbard, were studied on five hard-bottom transects along gradients of environmental conditions from the glacier at the fjord's head to the fjord's mouth at depth-range 0–30 m. Hydrozoa colonies are widely distributed on rock and gravel substrata in Kongsfjorden. In general, however, hydroids are not dominant or subdominant in zoobenthic communities. The exception is Symplectoscyphus tricuspidatus var. acuminatus, colonies of which were sometimes abundant enough to determine the community structure and characteristics of benthic diversity. Of the 23 species recorded in this study, Laomedea flexuosa, Phialella quadrata and Halecium tenellum as well as representatives of family Stylasteridae were recorded from Svalbard waters for the first time. Hydroid diversity was highest in the zoobenthic community structured by branched bryozoans. The abundance and distribution of hydroids were reduced, to some extent, in the inner part of the fjord compared to the outer fjord. Species richness of hydroids was high at shallow depths, decreased at around 15 m and then increased again to 30 m depth. Species with Low-boreal–Arctic and Panoceanic distributional ranges were the most frequently occurring species. Depth, type of background substratum and amount of silt on its surface were the main factors influencing hydroid distribution. Description of all recorded taxa distributions together with data on their habitat and associations in zoobenthic communities are presented in an Appendix.

The community structure of shallow rocky reef fish fauna of the Azores Archipelago is described from underwater visual censuses carried out at eight areas (Terceira and Corvo Islands). A total of 52 fish species from 26 different families was observed, and the ten most abundant fish corresponded to 82.7% of all fish. Trophic categories are given for observed species with comments on distribution and densities along sampled depth strata. Mean densities along sampled strata were tested for significant differences. Sparidae, Labridae and Carangidae were the most speciose families being Diplodus sargus, Pagellus acarne, Coris julis, Thalassoma pavo and Tripterygion delaisi the most abundant species that consequently also accounted for the highest densities.

Although there are no previous descriptions of the habits of chirostylids in the North Atlantic, it is likely that species in the genera Uroptychus, Eumunida and Gastroptychus have close ecological ties with deep-sea corals since they have all been recorded in trawl samples containing corals from >200 m depth. We analysed in situ distribution of Gastroptychus formosus and potential hosts using a ROV at a range of north-eastern Atlantic sites and found that this species forms a close association with deep-sea corals that resembles the chirostylid–anthozoan associations reported in shallow Indo-Pacific waters. We update the known distribution for G. formosus, confirming that it is an amphiatlantic species that occurs along the Mid-Atlantic Ridge at least as far south as the Azores and along continental margins from the Canary Islands to Scotland at depths of 600–1700 m. The adults have very specific habitat preferences, being only found on gorgonian and antipatharian corals with a strong preference for Leiopathes sp. as a host. This highly restricted habitat preference is likely to render chirostylids vulnerable to the impacts of demersal fishing both directly, as by-catch, and indirectly through habitat loss.

Bright green auto-fluorescence was observed in the umbrellar margin, umbrellar marginal warts, tentacular bulbs, tentacles, and manubrium of laboratory-reared immature (1–14 days old) medusae of Eutima japonica from Japan and China. In vivo microscopic fluorescence spectra showed that the green fluorescence was similar to that of green fluorescent protein (GFP) found in Aequorea victoria, although the maximum emission wavelength (503 nm) was slightly bluer. No fluorescence was detected in the cirri, statocysts, radial canals, velum, or subumbrella of the medusae. The fluorescence distribution pattern in E. japonica more closely resembles that of Eugymnanthea inquilina from the Mediterranean Sea than that of Japanese Eugymnanthea japonica, which is the derived species of E. japonica. This suggests that the common fluorescence pattern is convergently evolved in the former two species, perhaps owing to the as yet unclarified physiological and/or ecological function of GFP and/or GFP-like proteins.

The colossal squid (Mesonychoteuthis hamiltoni) is the world's largest invertebrate and its large size and some unique morphological characters have fuelled speculation that it is an aggressive top predator in the circum-Antarctic Southern Ocean. Here, we present estimates on the metabolic and energetic demands of this cold-water deep-sea giant. The estimated mass-specific routine metabolic rate for the colossal squid at 1.5°C was 0.036 µmol O2 h−1 g−1 and the projected daily energy consumption (45.1 kcal day−1) was almost constant as a function of depth in the nearly isothermal Antarctic waters. Our findings also indicate the squid shows a slow pace of life linked with very low prey requirements (only 0.03 kg of prey per day). We argue that the colossal squid is not a voracious predator capable of high-speed predator–prey interactions. It is, rather, an ambush or sit-and-float predator that uses the hooks on its arms and tentacles to ensnare prey that unwittingly approach.

The effect of short-term (5 days) exposure to CO2-acidified seawater (year 2100 predicted values, ocean pH = 7.6) on key aspects of the function of the intertidal common limpet Patella vulgata (Gastropoda: Patellidae) was investigated. Changes in extracellular acid–base balance were almost completely compensated by an increase in bicarbonate ions. A concomitant increase in haemolymph Ca2+ and visible shell dissolution implicated passive shell dissolution as the bicarbonate source. Analysis of the radula using SEM revealed that individuals from the hypercapnic treatment showed an increase in the number of damaged teeth and the extent to which such teeth were damaged compared with controls. As radula teeth are composed mainly of chitin, acid dissolution seems unlikely, and so the proximate cause of damage is unknown. There was no hypercapnia-related change in metabolism (O2 uptake) or feeding rate, also discounting the possibility that teeth damage was a result of a CO2-related increase in grazing. We conclude that although the limpet appears to have the physiological capacity to maintain its extracellular acid–base balance, metabolism and feeding rate over a 5 days exposure to acidified seawater, radular damage somehow incurred during this time could still compromise feeding in the longer term, in turn decreasing the top-down ecosystem control that P. vulgata exerts over rocky shore environments.

Biometric relationships of size and weight were estimated for the Argentinean prawn (Artemesia longinaris), a new commercial penaeid prawn exploited in the south-western Atlantic. Morphometric and meristic traits were used to elucidate population structure of this species along its distribution area. The morphological relationships were estimated by a simple linear regression, considering total length (TL) as the dependent variable. The males collected in southern Brazil, an area under influence of the Subtropical Convergence, presented a slightly lower TL increment than females. A marked reduction in slopes of males between populations from southern Brazil was observed in autumn and winter. Additionally, relative growth in length of males from Argentina is similar to that observed during autumn and winter in southern Brazil. The other morphometric and meristic variables used also indicated higher similarities between southern Brazil and Argentina, which may be explained by relative growth associated to water temperatures or migration during winter, taking advantage of the oceanographic systems connecting both sites. Moreover, the population from Rio de Janeiro seems morphologically apart from the others, forming a separate unit stock.

Relative growth and reproductive biology of Munida rutllanti were investigated for the first time in the Adriatic Sea. A total of 938 individuals were analysed. Sex-ratio differed statistically from the expected 1:1. Six individuals exhibited secondary sex characteristics of both males and females. Carapace length of males ranged from 10.5 to 21.5 mm, while in females it ranged from 11.2 to 19.4 mm. Sexual dimorphism was observed in seven morphometric characters. Ovigerous females were first observed in summer and later in autumn with higher frequency. Realized fecundity showed wide variation (273–3250 eggs) and positive correlation between the brood and female size. An epicaridean isopod Pleurocrypta sp., parasitizing the gill chamber of both sexes was isolated and its effect on the oogenesis was studied by histological examination of host reproductive system. Growth inhibition, modification of secondary sex characteristics, as well as retardation of oogenesis and failure of oviposition, are repercussions of bopyrid infestation. Given the small prevalence (7.85%) of the bopyrid in the M. rutllanti Adriatic population, we assume that for the moment there is no severe effect on the host population dynamic.

Arbacia dufresnii is a common and abundant sea urchin in Argentinean waters. The gonad index cycle was studied for this species in Golfo Nuevo, Patagonia, from May 2001 to March 2003. Comparative studies of gonad index and gonad histology were performed for the three years of 2001, 2002 and 2003. The gonad index reflects gonadal stages, and the results showed two spawning peaks for the studied period. The first spawning event occurred during spring and a second major spawning occurred in summer. Proliferation and differentiation of gametes, and the presence of mature gonads were synchronous among males and females. Male and female individuals spawned synchronically. Gonad resorption was observed for males and females. Histological examination data reflected gonad index analysis, providing together a good estimation of the reproductive cycle of A. dufresnii. Statistical analyses showed a positive correlation between gonad index and photoperiod. The mean fresh oocyte diameter observed was 87.1 µm (SD = 1.3 µm) with a jelly coat of 12.7 µm (SD = 0.9 µm), which corresponds to planktotrophic larval development.

The ciliate Euplotes encysticus Yonezawa, 1985 was insufficiently described so far regarding its living morphology, infraciliature and silverline system. Recently, a China population was isolated from brackish water (salinity 6‰) near a coastal sandy beach (114°32′E 22°43′N) of the Daya Bay, South China Sea and subsequent investigations were performed on it in detail. Based on data available, the morphology of this species was summarized and a new diagnosis is given which is characterized by: medium-sized body with consistently 9 frontoventral, 2 caudal and 2 left marginal cirri; 30–40 adoral membranelles; 7 dorsal kineties; dorsal silverline system consisting of complex type with irregular network; capable of encystment. Both the morphology and SSr RNA gene sequence show, with high support, a close relationship of E. encysticus and Euplotes muscorum.

Three sampling surveys were carried out, by SCUBA diving, in the Algarve (southern Portugal) in December 2007. A total of 57 species of gymnolaemate Bryozoa were identified. Of these, eight species were new to science (Mollia cristinae sp. nov., Hippoporina teresae sp. nov., Schizoporella spinosa sp. nov., Fenestrulina inesae sp. nov., Celleporina derungsi sp. nov., Dentiporella saldanhai sp. nov., Rhynchozoon celestinoi sp. nov. and Rhynchozoon rosae sp. nov.). Another 16 species are cited for the first time in Portuguese waters; of these, Stephanollona contracta is cited for the first time in European continental waters. Reference material deposited in several collections was also revised, and lectotypes and paralectotypes were selected for Mollia multijuncta and Dentiporella sardonica, species subjected to diverse interpretations. In addition Rhynchozoon revelatus was found to be a junior synonym of D. sardonica. The species collected in the study area reflect the existence of Lusitanian, Mauretanian and Mediterranean influences; the latter influence is of interest as the Mediterranean species found were previously considered endemic to the Mediterranean Sea and are usually found in shallow waters. Finally, a large degree of intracolonial variability was observed in some of the species studied, especially in Stephanollona armata, which may be taken into account in studies of the geographical variability and differentiation of cryptic species.

We redescribe Imajimaea draculai based on newly collected specimens from the Swedish west coast and describe for the first time its association with the sea pen Funiculina quadrangularis. We assess the phylogenetic position of I. draculai within Autolytinae using nuclear 18SrDNA, together with mitochondrial COI and 16SrDNA, and we estimate its intraspecific variation using nuclear ITS and mitochondrial COI. Our molecular data unequivocally show that I. draculai belongs to the tribe Procerini in a clade consisting of Procerastea, Virchowia and Imajimaea that is separated from all other Procerini taxa for which molecular data are available. No intraspecific variation is found in I. draculai for the sequenced molecular markers.

Patella ferruginea is an endangered marine gastropod, distributed on the western Mediterranean coasts, whose range has progressively contracted, due to intense human exploitation. A genetic analysis was performed on two unidentified young individuals belonging to the genus Patella found attached to the shell of an adult of P. ferruginea, with a twofold aim: (i) to achieve their correct taxonomic attribution by means of the DNA barcoding; and (ii) to shed some light on the hypothesized larval philopatry and/or juveniles phoresis in P. ferruginea. The survey was carried out comparing the sequences of the cytochrome c oxidase subunit I (COI) Folmer region obtained for the two juveniles with those obtained for adults of P. ferruginea, P. caerulea, P. rustica, and P. ulyssiponensis, from different sites of the western Mediterranean, by means of maximum likelihood cluster analysis and a Bayesian-based assignment test. Results obtained evidenced that: (i) COI may be used with confidence as DNA barcoding in the genus Patella; and (ii) the two juveniles studied are not conspecific: one belonged to P. ferruginea, the other to P. rustica. The latter finding raises doubts about the juvenile phoresis and about the occurrence of larval philopatry in P. ferruginea, suggesting that an extensive use of a molecular approach for a better evaluation of the recruitment features of this endangered species should be adopted.