The sampling of epiphytes is fraught with methodological difficulties. We present a protocol to sample and analyse vascular epiphyte richness and abundance in forests of different structure (SVERA). Epiphyte abundance is estimated as biomass by recording the number of plant components in a range of size cohorts. Epiphyte species biomass is estimated on 35 sample-trees, evenly distributed over six trunk diameter-size cohorts (10 trees with dbh > 30 cm). Tree height, dbh and number of forks (diameter > 5 cm) yield a dimensionless estimate of the size of the tree. Epiphyte dry weight and species richness between forests is compared with ANCOVA that controls for tree size. SChao1 is used as an estimate of the total number of species at the sites. The relative dependence of the distribution of the epiphyte communities on environmental and spatial variables may be assessed using multivariate analysis and Mantel test. In a case study, we compared epiphyte vegetation of six Mexican oak forests and one Colombian oak forest at similar elevation. We found a strongly significant positive correlation between tree size and epiphyte richness or biomass at all sites. In forests with a higher diversity of host trees, more trees must be sampled. Epiphyte biomass at the Colombian site was lower than in any of the Mexican sites; without correction for tree size no significant differences in terms of epiphyte biomass could be detected. The occurrence of spatial dependence, at both the landscape level and at the tree level, shows that the inclusion of spatial descriptors in SVERA is justified.

The factors that influence food choice have implications for animal survival, reproduction and population growth. We conducted a 1-y study of food choice by four mountain gorilla groups that consumed herbs and fruit at two locations differing spatially and temporally in food availability in Bwindi Impenetrable National Park, Uganda. We collected data on 45 important foods consumed by the gorillas, the availability of those foods in each gorilla group's home range and their corresponding nutrient and phenolic concentrations. Employing a linear multiple regression, we tested three hypotheses regarding the influence of food availability and the nutritional and phenolic concentrations of food on food choice. Regardless of changes in herb availability, the choice of herbs was positively influenced by their abundance and sugar concentrations and negatively influenced by their fibre, condensed tannin and protein concentrations. Furthermore, regardless of changes in fruit availability, the choice of fruit was positively influenced by its abundance and negatively influenced by its condensed tannin concentrations. During periods of low fruit availability, the gorillas did not increase the consumption of herbs high in fibre and sugar. The choice of herbs low in fibre had less of an influence on food choice at the location with lower fruit availability than the other location. Our results underscore the importance of incorporating both availability and nutrient concentrations into studies of food choice; by doing so we found Bwindi gorillas were able to choose abundant, relatively high-quality foods year round.

Knowledge of the population dynamics of tropical trees has expanded considerably in the past 20 years. An important observation deriving from these investigations is the confirmation that population behaviour varies both in time and space. A tool recently developed to evaluate the potential for variation in vital rates, and therefore in population growth rate, is variance-standardized perturbation analysis (VSPA). In this paper we report the results of a 2-y demographic analysis of a population of the tropical tree Manilkara zapota in a subtropical rain forest in the Mexican state of Veracruz, in which variance-standardized perturbation analysis was applied and compared with the results of the traditional elasticity analyses. To build population projection matrices, we tagged and followed a sample of 91 juvenile and adult individuals, and 635 seedlings. We subdivided the sample in nine size classes (defined by tree height and dbh; as well as leaf size, in the case of seedlings) and estimated transition probabilities and fecundity for each class. The demography of M. zapota varied greatly from the first to the second year of study (in 1998–1999, λ = 0.987, while in 1999–2000, λ = 1.038) due to negligible seed production during the first year and a massive reproductive event during the second. The largest elasticity values for both years corresponded to persistence of large juveniles and adults. Although the fecundity entries showed very low elasticity values, the variance-standardized perturbation analysis revealed the importance of these matrix entries; transition to larger categories and retrogression to smaller ones of saplings and juveniles were also important demographic processes contributing to variation in λ according to the VSPA. Thus, although the results of elasticity analysis and VSPA were similar for the 1998–1999 matrix, they differed substantially for the 1999–2000 matrix. In the latter, the VSPA enhanced the importance of demographic processes that are intuitively relevant for the population studied. This points toward the necessity of further exploring the use of VSPA, since it offers several advantages over the traditional elasticity analysis: it concentrates on the impact on λ of vital rates that actually vary, and the interpretation of the results is more realistic and straightforward.

The pollination ecology, breeding system and population genetic structure of three climbing Bauhinia species B. championii (4 populations, 23 individuals), B. corymbosa (2 populations, 25 individuals) and B. glauca (8 populations, 76 individuals) were studied in Hong Kong, southern China. We hypothesize that the climbing Bauhinia species will attract targeted pollinators to achieve out-cross success and high levels of self-incompatibility will be expected to maintain diversity, with local population expansion relying on vegetative propagation. All three species have inflorescences consisting of numerous small, pale, fragrant flowers, which show diurnal anthesis. Field observations revealed that all three species are predominantly pollinated by bees (particularly Apis mellifera) and butterflies (Graphium and Papilio species), although B. championii is also pollinated by wasps and flies. Bauhinia corymbosa and B. glauca have sucrose-dominant nectar, whereas B. championii has hexose-dominant nectar. In controlled-pollination experiments fruit and seed set were generally highest following artificial out-crossing. The index of self-incompatibility of B. championii is 1.07, indicating self-compatibility; B. corymbosa and B. glauca were obligately self-incompatible. The population genetic structure and variation of the Bauhinia species was investigated using ISSR markers. Generally the three species have moderate within-population (mean HS = 0.206) and high among-population genetic variation (mean GST = 0.284). No correlation exists between the geographical and genetic distance, possibly due to the small local population size. All three species showed high levels of heterozygosity as expected for predominantly out-crossing long-lived K-selected species.

To understand how fruit tree characteristics and microhabitats shape the assemblage of birds on fig trees and the pattern of fig–bird interactions, we observed and recorded, over 96 d and 816 h, the frugivorous birds visiting 32 individual trees belonging to 14 species of Ficus that were distributed across four different sites. A total of 30 bird species were recorded as eating figs, comprising 66.7% of the total number of frugivorous bird species recorded at the four sites. Small passerine birds such as bulbuls were the dominant frugivores for fig species. The number of bird species visiting different fig trees was significantly influenced by the crop size and canopy volume. Fruit colour and fruit size did not significantly influence the number of bird species, whereas habitats appeared to influence the composition of visiting birds. The fig–frugivorous bird interaction was asymmetrically structured, and the degree of nestedness appeared to be influenced by the forest type and degree of disturbance: the degree of nestedness in non-limestone forest tended to be higher than limestone forest; forest with less disturbance tend to be more nested compared with the open forest with high disturbance.

Diversity is positively correlated with water availability at global, continental and regional scales. With the objective of better understanding the mechanisms that drive these relationships, we investigated the degree to which variation in water availability affects the performance (recruitment, growth and survival) of juvenile trees. Precipitation was supplemented throughout two dry seasons in a seasonal moist forest in south-eastern Peru. Supplementing precipitation by 160 mm mo−1, we increased soil moisture by 17%. To generate seedling communities of known species composition, we sowed 3840 seeds of 12 species. We monitored the fates of the 554 seedlings recruited from the sown seeds, as well as 1856 older non-sown seedlings (10 cm ≤ height < 50 cm), and 2353 saplings (> 1 m tall). Watering significantly enhanced young seedling growth and survival, increasing stem density and diversity. Watering diminished the recruitment of species associated with upland forests, but increased the survival of both upland- and lowland-associated species. Though supplemental watering increased the growth of older seedlings, their density and diversity were unaffected. Sapling performance was insensitive to watering. We infer that variation in dry-season water availability may affect seedling community structure by differentially affecting recruitment and increasing overall survival. These results suggest that differential seedling recruitment and survival may contribute to the observed relationships between water availability, habitat associations and patterns of tree species richness.

Young snakes are rarely seen in the field and little is known about their habits, mostly because they are too small for radio-telemetry (the primary method for studying snake spatial ecology). However, the offspring of some larger species can be fitted with transmitters and we investigated the spatial ecology and habitat use of ten hatchling water pythons (Liasis fuscus: Pythonidae) in the floodplain of the Adelaide River, tropical Australia. Patterns of habitat use in the late wet season and during the dry season were similar to those of adults tracked in the same vicinity in an earlier study. Soon after release the young snakes moved to the floodplain, avoiding pasture areas. Diurnal refuge sites were typically in the base of grass clumps or below the soil surface, especially in sites with thick vegetation and deep, wide soil cracks. Adult snakes are more sedentary but move longer absolute distances (mean ± SE = 252 ± 50 m wk−1) than hatchlings (66.3 ± 41 m wk−1). However, hatchling snakes moved longer distances relative to body size (84.4 ± 1.1 body lengths wk−1) than did the previously studied adults (66.0 ± 1.1 body lengths wk−1). Mean and minimum body temperatures of the hatchlings were correlated with mean and minimum air temperatures, respectively.

Immediately after their transition from aquatic to terrestrial life, juveniles of many anuran species are restricted to the margins of natal ponds. Understanding the factors determining the duration of that pondside aggregation has direct management ramifications in the case of the invasive cane toad (Bufo marinus) in tropical Australia. Previous work suggests that dispersal confers biotic advantages (reduced risk of cannibalism, enhanced feeding opportunities) to juvenile toads, but desiccation risk constrains these small animals to the moist margins of the pond. If so, juvenile dispersal should be sensitive to fluctuating hydric conditions on a diel and seasonal cycle. We tested this prediction with field observations (monitoring of dispersal to and from the pond) and field experiments (manipulating hydric regimes). Our results support a dynamic model of juvenile distribution, with a primary role for temporal variations in desiccation risk as the primary factor driving dispersal. During the dry season, strong diel cycles in desiccation risk generate a ‘tidal’ flow of juveniles, dispersing out in the moist morning but retreating to the pond margins at midday. Dispersal rates were enhanced by artificial watering during the dry season, and by the onset of the wet season.

In tropical forests, most individual fruit-bearing trees depend on frugivores for seed dispersal (Howe & Smallwood 1982, Wilson 1992). Seed dispersal enhances germination potential, provides an opportunity for seeds to escape predation under the parent plants, and reduces seedling numbers under parent trees (Şekercioğlu et al. 2004). The way frugivores handle seeds and process them may influence the seed fate of many plants (Janzen 1971). The quantity of seeds dispersed and the quality of dispersal provided by frugivores impact plant fitness (Herrera & Jordano 1981). Schupp (1993) defined the effectiveness of seed dispersal by frugivores as an empirical measure of quantity of seeds dispersed and quality of dispersal from the parent plant to a suitable microsite. Seed dispersal by frugivores increases the chances for seedling survival away from the vicinity of the parent plant because in tropical forests seed predation is concentrated under adult trees that prevent seedlings from establishing near parent trees (Howe & Miriti 2004).

Seeds dispersed and deposited by wind, animals and other dispersal agents are a fundamental component of natural forest succession, plant regeneration and population maintenance, aside from increasing a population's genetic pool in tropical ecosystems (Henry & Jouard 2007, Muscarella & Fleming 2007, Wilson & Traveset 2000). Frugivorous bats and birds are ideal vectors for long-distance seed dispersal; therefore, studies of the food habits of frugivores and the specific identities of the dispersers are essential for understanding ecological patterns and processes in tropical environments. Studies related to succession processes, the frequency, number and composition of seeds dispersed by animals are essential in order to generate new data and hypotheses, consequently the method and quality of obtaining data are important.

An animal's fitness is in part based on its ability to manage the inherent risks (foraging costs, predation, exposure to disease) with the benefits (resource gain, access to mates, social interactions) of activity (Abrams 1991, Altizer et al. 2003, Lima & Bednekoff 1999, Rubenstein & Hohmann 1989, Wikelski et al. 2001). Thus, understanding an animal's pattern of activity is key to understanding behavioural and ecological processes. However, while numerous laboratory methodologies are available to continuously quantify activity over long periods of time, logistical difficulties have greatly hindered activity studies of animals in the field (DeCoursey 1990).

There have been few telemetry studies on large and medium-sized mammals from Neotropical lowland forests. This can partly be explained by the difficulty of tracking animals with radio-telemetry in these forests, often in remote areas with poor access due to limited transportation infrastructure. Researchers have been forced to follow their collared animals by aeroplane (Crawshaw 1995, Fragoso 1998, Rabinowitz & Nottingham 1986), but aerial telemetry is dangerous and involves difficult logistics and high costs. GPS (Global Positioning System) collars that allow the collection of data automatically at long intervals would be a good alternative. The effect of canopy cover on GPS fix success and location accuracy was of concern from the beginning and has been widely investigated in temperate forests (D'Eon 2003, Di Orio et al. 2003, Dussault et al. 1999, Moen et al. 1996, Rempel et al. 1995). All studies found a significant decrease in fix success and a large increase in location errors under forest canopy. Tropical lowland rain forests have a much denser canopy than temperate forests, and up to now the performance of GPS collars in tropical forest has been very poor. Rumiz & Venegas (2006) showed that while GPS collars worked in the dry forest of the Bolivian Chaco, they only obtained a successful fix in 1–3% of all attempts in the lowland forest of the Madidi National Park, Bolivia.

Leaf-cutting ants (species of Atta and Acromyrmex) are dominant herbivores and play a key role as ecosystem engineers of tropical and subtropical America (Fowler et al. 1989, Weber 1972). Not only are they among the most polyphagous and voracious herbivorous insects, cutting up to 15% y−1 of the leaf standing crop (Urbas et al. 2007, Wirth et al. 2003), but also they strongly affect the light environment and the nature of plant assemblages via ant-nest-mediated disturbances (Farji-Brener & Illes 2000, Hull-Sanders & Howard 2003, Moutinho et al. 2003). Some leaf-cutting ant species have turned into an omnipresent feature of present-day neotropical landscapes and a wealth of studies has documented their abundance to drastically increase with increasing agricultural land use, disturbance and deforestation/fragmentation (Fowler et al. 1986, Jaffe 1986, Terborgh et al. 2001, Vasconcelos & Cherrett 1995, Wirth et al. 2007). In view of their ecosystem engineering capacity and the ever-increasing conversion of tropical forests into agricultural landscapes (Wright 2005), it has been concluded that disturbance-driven accumulation of Atta colonies leads to far-reaching and deleterious consequences in present-day neotropical landscapes (Wirth et al. 2008). But what about the opposite scenario of regenerating forests? Is disturbance-mediated hyper-abundance of leaf-cutting ants a reversible phenomenon? We believe that this question is highly relevant because (1) knowledge of the dynamics of leaf-cutting ant populations during forest regeneration is lacking and (2) natural secondary succession has become a widespread phenomenon after land is abandoned or temporarily fallowed (Wright 2005). In the Brazilian Amazon during the 1990s, for example, secondary forests have reclaimed 31% of the once deforested land (Perz & Skole 2003).