Capture–mark–recapture methods were used to study the influence of density-dependent and density-independent factors on population dynamics of the spiny pocket mouse Heteromys desmarestianus in a lowland forest in Belize. Fourteen trapping sessions were conducted in six 0.5-ha grids at irregular intervals from July 2000 to March 2005. Responses by H. desmarestianus to four disturbance events depended on the type and magnitude of the events. Although fluctuations in density were strongly related to fruit availability, the disturbances tended to magnify direct and delayed density-dependent effects on reproduction and juvenile survival. A catastrophic flood in July 2000 eliminated the entire population, but by September 2001 population density had increased from 34.4 individuals ha−1 immediately pre-flood to 42.5 individuals ha−1. Indirect effects from a hurricane in October 2001 had greater and longer lasting influences on demographic rates than direct effects from less severe floods in August 2002 and September 2003. Fruiting ceased for almost 2.5 y after the hurricane, resulting in extremely low juvenile survival and a decline in density from 46.8 individuals ha−1 in January 2002 to 23.0 individuals ha−1 in January 2004. Fruiting began again in January 2004, and after several subsequent pulses of reproduction and generally higher rates of juvenile survival the population reached a maximum of 77.3 individuals ha−1 in March 2005. Inferences from the study, especially on the duration of delayed-density-dependent effects, must be made cautiously because of the irregular trapping intervals resulting from the unplanned disturbances. However, the results indicate that population dynamics of many tropical small-mammal populations will be driven by direct and indirect effects from density-independent events that amplify density-dependent influences on demographic rates.

Seedlings in tropical forests are ultimately the source of canopy trees, thus factors controlling their composition and growth potentially influence the composition of the forest. Seedlings are primarily limited by above-ground competition with trees, but below-ground competition is potentially also important. Over 4 y we experimentally reduced below-ground competition by trenching to 50 cm and reduced drought stress by irrigating in the dry seasons (6 cm every 2 d) in the understorey of a semi-evergreen rain forest in Panama. There were four irrigated plots and four unirrigated, in each plot there were eight subplots (four trenched, four untrenched); 32 seedlings (two per subplot) of each of four tree species were equally allocated to the four treaments; the four species were: Aspidosperma cruenta; Gustavia superba; Simarouba amara and Tachigali versicolor. Over all species together, trenching increased seedling height by 41% and leaf area by 140% over 4 y. The cause was likely to be increased nutrient supply, because the amounts of N, K and Ca were higher in trenched plants, though concentrations were not higher. Irrigation had no significant effect on growth. Irrigation, but not trenching, reduced seedling mortality. We conclude that below-ground competition was a major limitation for seedling growth for at least some common species (Gustavia and Tachigali in this experiment). More experiments are necessary to determine whether below-ground competition is also important in other tropical rain forests on fairly fertile soils.

Spatial analysis can be used to relate the patterns of tree species to their regeneration syndromes – pioneer to late-successional – and is a first step in refining hypotheses about the species traits and biotic and abiotic factors that give rise to forest community dynamics. This study examines the spatial pattern of the most abundant trees in three 0.45-ha plots in species-poor lowland rain forests on oceanic islands in Tonga, Western Polynesia, that experience frequent natural disturbance and have a 3000-y history of shifting cultivation. We contrast secondary vs. remnant late-successional forest, with particular attention paid to the spatial dispersion and clustering of tree species, and the presence of spatial dependence in the density of seedlings and saplings. Shade-tolerant species were not strongly clustered at any scale. They did not appear to be dispersal limited, in late successional forest, and only some showed patterns consistent with density-dependent mortality (more clumped when small). Shade-tolerant species were more clumped in secondary forest, and may be dispersal-limited there because vertebrate dispersers prefer primary forest. Shade-intolerant species were clumped in gaps in late-successional forest, but some were also clumped in secondary forest, indicating that they too may be dispersal limited during secondary succession. We also compared the species composition of seedlings and saplings in the centre of plots with trees in the surrounding area and inferred that active dispersal (by vertebrate frugivores) contributed as much as 50% to site species richness.

Sapling mortality exceeds recruitment for many species of trees in the dry forest of 16-y-old islets in Lago Guri, Venezuela. Failure of sapling recruitment is potentially attributable to the aberrant animal communities of these islands. Predators of vertebrates are absent and densities of pollinators and seed dispersers are substantially reduced in comparison to the nearby mainland. In contrast, predators of invertebrates, rodents and generalist herbivores (leaf-cutter ants, howler monkeys, common iguanas) are present at greatly elevated densities. Given these distortions in the animal community, recruitment failure of saplings could potentially be attributable to several causes: reduced pollination or seed dispersal, excessive seed predation or seedling herbivory. Two of these hypotheses are tested herein. The seed predation hypothesis predicts greater seed removal in the presence of hyperabundant rodents, and the seedling herbivory hypothesis predicts reduced seedling survival in the presence of hyperabundant herbivores. Seed removal trials were conducted with 18 species of forest trees, using both exposed and lightly buried seeds. Seed removal was not generally higher on islands supporting hyperabundant rodents, contrary to the seed predation hypothesis. Seedlings exposed to herbivores for 4 mo suffered the highest mortality on small islands supporting hyperabundant rodents and leaf-cutter ants. Saplings survived equally well in cages open to arthropods + rodents as in cages open only to arthropods, suggesting that there was no additive effect of rodents on seedling mortality. Current evidence points to excessive seedling herbivory by arthropods, especially by leaf-cutter ants, as the principal cause of recruitment failure on predator-free Lago Guri islets.

Most trees in the eucalypt savannas of Australia have hollow cores, or pipes, caused by termite activity, yet little is known about their effect on tree growth or survival. Five hundred and forty-one trees with known growth and survival histories were cored to determine pipe diameters in wooded savanna of Kakadu National Park, north Australia. Generalized linear modelling and multi-model inference was used to analyse frequency and degree of piping relative to initial tree diameter at breast height (dbh), eco-taxonomic group or species of eucalypt. Growth (dbh increment) and survival (4 y) were analysed relative to initial tree size, pipe ratio (pipe diameter:dbh) and eco-taxonomic group. The frequency of piping was strongly dependent on dbh, increasing with size of tree, and was highest in eucalypts. Growth and survival of eucalypts increased with tree diameter and decreased with pipe ratio. For example, from modelled data, 10-cm-diameter trees without pipes grew 0.14 cm y−1 with 85% survival vs. 10-cm trees with pipe ratios of 0.60 which had near-zero growth and only 46% survival. Comparing 40-cm-diameter trees without pipes to those having pipe ratios of 0.80, growth was 0.22 vs. 0.05 cm y−1, with little difference in survival, 97–99%, respectively. Contrary to the suggestion that tree hollows are an adaptive trait whereby trees benefit by the release of nutrients, in the north Australian eucalypt savannas the net effect of termite piping on individual tree growth and survival was negative.

We studied the interaction between the bromeliad Werauhia gladioliflora and its flower visitors in the Caribbean lowland forest of Costa Rica, in order to quantify the mutual benefits to both partners. Over 6 y, the bromeliads flowered mainly between October and December; with an individual inflorescence flowering for an average of 34 d (n = 233 inflorescences). The bromeliad showed a flexible breeding system with autogamy occurring in addition to cross-pollination. Exclusive pollinators were small nectar-feeding bats (Phyllostomidae: Glossophaginae). The average volume of nectar produced per flower was 1.1 ml (n = 25 flowers). The main visitor was the bat Glossophaga commissarisi, which approached the flowers exclusively using hovering flight. Visitation by bats, measured by infrared light sensors, occurred throughout the night with an activity peak after midnight. Median hovering duration of the bats at the flowers was 320 ms (n = 1246 visits). Hourly mean of hovering duration was negatively correlated with hourly nectar secretion rate. The flower visitation behaviour of a bat over the night seems to be shaped by a combination of intrinsic physiological factors and by nectar availability. Size of both flowers and visitors make Werauhia gladioliflora a very accessible system for quantification of factors affecting evolution of bat–plant interactions.

To understand the population dynamics of a species, it is necessary to document the way in which its demographic behaviour varies through space and time. Anthropogenic disturbance, such as shifting cultivation, is an important factor causing demographic variation in many tropical non-timber forest products. The leaves of the palm Sabal yapa are an important non-timber forest product used for thatching by Mayan peoples. The demography of Sabal yapa was studied in three habitats (mature forest, successional forest and crop fields), representing successional phases along the slash-and-burn agricultural cycle in the Yucatan Peninsula. Matrix population models, along with elasticity analyses and life-table-response experiments were employed. Population growth rate differed between patches (MF: λ = 1.043; SF: λ = 1.027; CF: λ = 0.959). Only the λ value of the mature forest was significantly higher than unity. Fecundity and seedling survival were lowest in the crop fields and highest in the mature forest. The elasticity analyses and life-table-response experiments showed that entries with a high positive contribution to λ also showed high elasticity values, while those with a negative contribution to λ showed low elasticity. Thus, both analyses are crucial to understand the demography of a species and to aid in conservation and management practices.

The single most important food source for Pteropus rufus at Berenty, in south-east Madagascar, is the pollen of Agave sisalana, a commercial species introduced to the area 60 y ago, which was widely available and constantly eaten by the bats during this 28-mo study. The diet of the bats at this site is unique in this respect when compared with P. rufus elsewhere in Madagascar and with other Pteropus species. The dietary breadth of P. rufus at Berenty is narrow, consisting of only 14 plant species, identified through microsopic faecal analysis and direct field observations, and three unidentified ones. The bats also eat locally cultivated and introduced fruits (Mangifera indica, Psidium cf. cattleianum, Sclerocarya caffra, Cordia sinensis and Hylocereus species) and native and endemic forest species (Tamarindus indica, Celtis philippensis, Ficus megapoda, F. grevei, F. pachyclada and Grewia species). The majority of the plant species used by P. rufus for food are located within the gallery forests of the Mandrare valley. No evidence of adjacent endemic spiny forest species was identified in their diet. Thus, conservation of the remaining gallery forest as well as retention of the sisal plantations is important to maintain the food sources of P. rufus at this site.

Many areas of rain forest now exist as habitat fragments, and understanding the impacts of fragmentation is important for determining the viability of populations within forest remnants. We investigated impacts of forest fragmentation on genetic diversity in the butterfly Mycalesis orseis (Satyrinae) in Sabah (Malaysian Borneo). We investigated mtDNA diversity in 90 individuals from ten forest sites typical of the sizes of forest remnants that currently exist in the region. Nucleotide diversity declined with increasing isolation of remnants, but there was no effect of remnant size or population size, and haplotype diversity was similar among sites. Thus, approximately 50 y after forest fragmentation, few changes in genetic diversity were apparent and remnants apparently supported genetically viable populations of this butterfly. Many studies have shown that responses of species to habitat fragmentation usually follow a time delay, and so we developed a Monte Carlo simulation model to investigate changes in genetic diversity over time in small remnants. Model output indicated a substantial time delay (> 100 y) between fragmentation and genetic erosion, suggesting that, in the smallest study remnants, an increased risk of extinction from reduced genetic diversity is likely in the longer term.

Frugivores display daily and seasonal behavioural variation, yet the influence of this variability on subsequent seed shadows is rarely considered. We investigated the extent to which three aspects of gibbon (Hylobates muelleri × agilis) foraging and ranging behaviour (revisitation of favoured fruit sources, daily and monthly ranging patterns) influenced seed dispersal distances and deposition sites for two groups in dipterocarp forests at the Barito Ulu research site, Kalimantan, Indonesia. Dispersal distances and sites were estimated using gut retention times and ranging patterns collected over 12 mo. Gibbons dispersed few seeds (0.7%) under parent trees and most seeds (> 90%) were dispersed more than 100 m. Mean dispersal distances differed significantly between groups (339 m and 431 m) and across different months. Deposition site was only influenced by time of day, with all seeds swallowed in the first hour of activity being deposited under sleeping trees used that night. Both groups visited all 0.25-ha quadrats within their home range over the study period, indicating that gibbons potentially disperse seeds throughout their home range. Given the general uniformity of the gibbon seed shadow, the intensity of home range use and large seed dispersal distances, gibbons appear to be consistently effective seed dispersers and are probably one of the most important frugivores in Asian rain forests.

Seed dispersal by frugivorous animals has the potential to affect both the demography and the patterns of gene flow of plant populations. In many tropical and subtropical forests a large number of seeds are efficiently dispersed by ‘non-restricted frugivores’ (NRFs, animals for which fruits do not represent the main bulk of their diet), a group commonly underestimated as seed dispersers. Here, we synthesize data from three different neotropical forests (Argentina, Panama and Costa Rica), evaluating several aspects of seed dispersal by two species of Cebus monkeys. Capuchin monkeys are NRFs broadly distributed throughout Central and South America that are potentially long-distance seed dispersers. In this study we evaluated the influence of the foraging behaviour of Cebus apella and C. capucinus on the patterns of seed dispersal. Even though the distribution of fruit types significantly differed among forests, no evidence of diet selection was found, indicating that the fruits consumed by monkeys represent a random sample of the pool available at each site. Neither seed treatment, nor the evenness with which fruit species were consumed, differed among forests. In contrast, the feeding time per fruiting tree (10–45 min), the diversity of fruits consumed (H = 2–3.3), and seed dispersal distances (100–400 m), differed among the three forests. Thus, capuchin monkeys consume a high diversity of fruits in transit producing a scattered dissemination of seeds in all study forests. This study highlights the ecological and evolutionary significance of seed shadows generated by NRFs, without neglecting the possibility that differences in the distribution of fruit patches, species richness and a range of environmental attributes among the studied forests, exert a strong influence on the outcome of the interaction between NRFs and plants.

Studies in western Amazonian forests have found that similarities in soil cation concentration and texture explain floristic similarities between sites, when these are measured using trees, pteridophytes or Melastomataceae. However, it is not known to what extent the three plant groups react to the same soil characteristics, because tree studies have almost always been conducted in different areas than studies on the understorey plant groups. We made inventories in 23 sites representing non-inundated rain forests on clayey to loamy soil in three regions of western Amazonia. Significant Mantel correlations between the floristic patterns of trees and pteridophytes were found in all three regions when floristic differences were measured with species presence–absence data. When species abundance data were used, and when the floristic patterns of trees and Melastomataceae were compared, significant correlations were found in one or two regions. Mantel correlations between plant groups were highest in the two regions where the observed variation in soil characteristics was largest. In all regions, the same soil variables emerged with significant Mantel correlations with trees, pteridophytes and Melastomataceae. Soil calcium and magnesium were most frequently retained in the models of multiple regression on distance matrices. On average, soil differences explained 50% of the variation in floristic differences (range = 14–84%), and geographical distances explained 16% (range = 0–64%). Our results demonstrate that beta diversities of the three plant groups are highly correlated, and that much of this congruence is explained by similar reactions to soil variation. These results support the idea that pteridophytes, and to a lesser degree Melastomataceae, can be used as indicators of general floristic and edaphic patterns in Amazonian rain forests. Since understorey plants are much quicker to inventory than trees, this would make it possible to recognize and map floristic patterns over huge areas of lowland Amazonia within a reasonable time.

Understanding tropical succession requires insight into propagule availability, which constrains possible woody plant recruitment, yet seed rain composition in multiple post-agricultural sites has seldom been examined. We monitored seed rain for 60 wk in five abandoned pastures in southern Costa Rica, collecting a total of 1 140 688 seeds of 165 morphospecies. Most seeds (80.1%) arrived during the wet season. Species richness was highest in the wet season and greater in forest than in pasture. Seed rain density was greatest at the forest/pasture edge and decreased drastically just a few metres into pastures. In and near the forest, animal-dispersed seeds were more abundant than seeds dispersed by other means, while wind-dispersed taxa increased in relative importance at greater distances from the forest. Total seed input to pastures did not reflect size of adjacent forest fragments, although seed rain density varied more than threefold among sites. Among-site variation in density of regenerating woody seedlings was roughly proportional to among-site variation in seed rain. Morphospecies composition differed significantly among sites. Also, seed rain and woody plant colonists were rather dissimilar in composition, suggesting that while propagule availability is necessary for early woody plant establishment, it is a poor predictor of successional trajectory.

A variety of processes have been identified as playing a key role in maintenance of hyper-rich tropical forest, among which ecological sorting caused by niche partitioning challenges stochastic dispersal processes. However, demographic responses to spatio-temporal resource variation that could result in biased species distributions are still little studied. In this paper we investigate from two censuses, c. 15 y apart, of a 12-ha permanent forest sample in French Guiana, how tree recruitment and mortality rates vary among hydrological soil types known to affect species habitat preferences and among ecological guilds related to species light requirement. The results indicate that both recruitment and mortality vary significantly with respect to these factors. While the mean instantaneous mortality and recruitment rates are estimated to 0.98 and 0.81%, respectively, pioneer species, canopy trees and hydromorphic bottomland soils depart significantly from these values. In particular, the pioneers, regenerating either from the soil seed bank or from post-opening seed rain, show faster dynamics than other species. These two guilds harbour probabilities of mortality elevated by a factor of 1.9 and 3.2, respectively, and probabilities of recruitment elevated by a factor of 4.9 and 3.1, respectively. Conversely, canopy trees show slower dynamics, with probabilities of mortality and recruitment lowered by a mean factor of about 0.5 with respect to other species. We also observe that trees growing in hydromorphic bottomlands prove to have significantly higher mortality and recruitment probabilities, by a factor of about 2 with respect to those growing in terra firme.

The effects of habitat fragmentation on seed dispersal can strongly influence the evolutionary potential of tropical forest plant communities. Few studies have combined traditional methods and molecular tools for the analysis of dispersal in fragmented landscapes. Here seed dispersal distances were documented for the tree Dipteryx panamensis in continuous forest and two forest fragments in Costa Rica, Central America. Distance matrices were calculated between adult trees (n = 283) and the locations of seeds (n = 3016) encountered along 100 × 4-m transects (n = 77). There was no significant difference in the density of seeds dispersed > 25 m from the nearest adult (n = 253) among sites. There was a strong correlation between the locations of dispersed seeds and the locations of overstorey palms favoured as bat feeding roosts in continuous forest and both fragments. Exact dispersal distances were determined for a subset of seeds (n = 14) from which maternal endocarp DNA could be extracted and matched to maternal trees using microsatellite analysis. Dispersal within fragments and from pasture trees into adjacent fragments was documented, at a maximum distance of 853 m. Results show no evidence of a fragmentation effect on D. panamensis seed dispersal in this landscape and strongly suggest bat-mediated dispersal at all sites.

Evaluation of proximate mechanisms (e.g. dispersal, immigration, competition, facilitation) that determine patterns of assemblage or community structure is an important step in the development of paradigms in ecology. Host–parasite systems are useful for such studies because host-parasite assemblages are easily defined units of study, each host individual harbours a sample from a community or assemblage, and many host species are common, providing replicate samples. I used ectoparasite assemblages from Noctilio leporinus collected from Paraguay to evaluate effects of host sex and body size on ectoparasite abundance and to determine if these assemblages exhibit a nested pattern of species co-occurrence. A total of 533 ectoparasites representing seven species and four families were collected from 28 hosts. Abundances of Paradyschiria fusca and Noctiliostrebla aitkeni responded positively to host body size. Host sex had no affect on ectoparasite abundances. Streblid bat fly assemblages from Noctilio leporinus were strongly and significantly nested. Abundances of all species of streblid were positively correlated with one another with Pearson product moment correlation coefficients between 0.424 and 0.646. Competition does not appear to affect community structure of streblids from Paraguayan Noctilio leporinus. Independent responses of species of streblid to host characteristics appear to mould assemblage structure in this system.

One possible mechanism underlying species losses in the tropics is an increase in predation due to habitat degradation. Relative levels of predation at three heights (ground, 1–1.5 m, > 5 m for nests and > 3 m for caterpillars) were compared across a gradient of disturbance in the Subic Bay Watershed Forest Reserve, Philippines over a 2-mo period. Four 750-m transects were established in each habitat type (closed-canopy forest, open-canopy forest, rural areas) where artificial nests and caterpillar models were placed within 10-m-radius plots and checked after a 5-d exposure period. Nests in open-canopy forest were least predated (16.7%), with predation in rural areas (58.3%) being higher than in closed-canopy forest (32.8%). Predation on nests at 1–1.5 m was significantly lower than ground nests. General linear mixed model analysis suggested that effects of habitat type on nest predation differed among heights. Attacks on caterpillars increased with disturbance (46.1–59.4%), but height was not found to have a significant effect on predation. Markings on plasticine models, camera traps and live traps were used to establish possible predators. Shifts in predator dominance among the habitats were observed. Vegetation cover, tree density and small mammal abundance were not correlated with mean predation in the transects.

Patches of wooded vegetation in nutrient-poor grassland characteristically contain high soil moisture and nutrient availability compared with surrounding grassland. These ‘islands of fertility’ appear stable in size, suggesting that tree recruitment at the patch boundary is limited. We hypothesize that tree establishment in adjacent grassland is limited by (1) competition for resources, (2) fire or (3) herbivory. In a South African grassland, we measured moisture availability and conducted a bioassay experiment to analyse whether soil nutrient limits tree recruitment at the patch boundary. We thus measured nutrient concentrations of maize plants grown in patch, boundary and grassland soil. To investigate whether browsing or fire affected tree seedlings at the patch boundary, we burned plots including patches, and used fences to exclude browsers. Neither soil moisture nor nutrient availability at the boundary differed from inside the patches, suggesting that tree recruitment at the boundary is not resource limited. Both fire and browsing combined caused a significantly lower tree seedling growth at the patch boundary, suggesting that these two factors can impede tree recruitment. The balance between positive feedback mechanisms facilitating tree recruitment, and the negative impact of fire and browsing can explain the apparent stability of these islands of fertility.

To survive, leaning trees on steep slopes with loose substrate can either resprout or turn upward to regain the normal vertical orientation of the growing tip. Data from 19 tree species were collected from 20 transects in coastal dune forest. Resprouting was negatively correlated with turning up and species abundance, and positively correlated with leaning and a dead primary stem. In contrast, turning up was associated with low probabilities of leaning and higher species abundance but not with a dead primary stem. Slightly inclined trees turned upwards more than severely inclined ones, which mostly resprouted. Leaning trees without exposed roots turned upwards, while severe erosion caused leaning and resprouting. Consistent with the latter, leaning trees in stable dune slacks frequently turned upwards, whereas leaning trees on narrow dune crests and steep landward slopes seldom did so. Small trees were more likely to turn upwards than big trees. Because of potentially greater costs to the individual of sprouting, stem reorientation precedes the resprouting response across the disturbance gradient. Consequently, species prone to stem reorientation and less likely to resprout, are dominant during late-succession. This study emphasizes the advantage under low levels of disturbance of turning up as an alternative strategy to resprouting for leaning trees.

Few studies have been conducted to investigate ecological roles of litter amphibians in forest ecosystems. In this study, ten field enclosures (3 m × 2 m × 0.4 m) were used to evaluate effects of the toad Bufo bankorensis on the abundance of litter invertebrates (microbivores, fragmenters and predatory arthropods) and litter decomposition rates in a subtropical forest of southern Taiwan. Litterbags collected from toad and control (toad-excluded) enclosures were analysed for the communities and abundances of litter invertebrates and decay loss during this decomposition study from September to December 2001. The presence of B. bankorensis significantly changed phosphorus concentrations in the litter, but not the densities of litter invertebrates (microbivores, fragmenters and predatory arthropods) or rates of litter decomposition. These results were not consistent with previous studies, which have shown that Plethodon cenereus in a temperate forest of north-east USA and Eleutherodactylus coqui in a tropical rain forest of Puerto Rico significantly changed decomposition rates. We suggest that ecological roles of ground-dwelling amphibians may be species-specific and vary with different terrestrial ecosystems.