Our aim was to disentangle the effects of different heat sources and the non-thermal properties of the substrate in the microhabitat choices of two lizard species living in savanna habitats of central-western Brazil: the teiid Ameivula aff. ocellifera (N = 43) and the tropidurid Tropidurus oreadicus (N = 23). To this end, a mixed structural resource selection function (mixed-SRSF) approach was used, modelling the probability of finding a lizard on a certain microhabitat based on environmental variables of used and simultaneously available places. First, we controlled for the effects of solar radiation, convection and the physical thermal properties of the substrate on substrate temperature. Then we assessed the effects of solar radiation, convection, conduction and the non-thermal properties of the substrate in the probability of use of a certain microhabitat. Results confirmed that substrate temperature was mediated by: air convection > solar radiation > physical thermal properties of the substrates. Moreover, the mixed-SRSF revealed that direct solar radiation and the non-thermal properties of the substrates were the only drivers of microhabitat selection for both species, with approximately the same strength. Our novel approach allowed splitting of the effect of different mechanisms in the microhabitat selection of lizards, which makes it a powerful tool for assessing the conformation of the interactions between different environmental variables mediating animal behaviour.

This study assesses the impact of four fire treatments applied yearly over 3 y, i.e. early fire, mid-season fire, late fire and no fire treatments, on the grass communities of Lamto savanna, Ivory Coast. We describe communities of perennial tussock grasses on three replicated 5 × 5-m or 10 × 5-m plots of each fire treatment. Tussock density did not vary with fire treatment. The relative abundance of grass species, the circumference of grass tussocks and the probability of having a tussock with a central die-back, varied with fire treatment. Mid-season fire had the highest proportion of tussocks with a central die-back while the late fire had the smallest tussocks. Tussock density, circumference, relative abundance and probability of having a central die-back varied with species. Andropogon canaliculatus and Hyparrhenia diplandra were the most abundant of the nine grass species. They had the largest tussocks and the highest proportion of tussock with a central die-back. Loudetia simplex was the third most abundant species but was very rare in no fire plots. The distribution of tussock circumferences was right skewed and dominated by small tussocks. The proportion of the tussocks with a central die-back strongly increased with circumference, which could lead to tussock fragmentation. Taken together, this study suggests that fire regimes impact grass demography and that this impact depends on grass species and tussock size.

The natural grasslands in South America have soils with low phosphorus (P) availability (1.0 to 7.5 mg kg−1), possibly altering the absorption and accumulation of P in grasses. We evaluated the chemical fractionation of P in the leaves of the most important grasses present in these grasslands to better understand the mechanisms involved in the storage of P. The grasses studied were Axonopus affinis and Paspalum notatum (fast tissue cycling and high nutrient demand) and Andropogon lateralis and Aristida laevis (slow tissue cycling and low nutrient demand). They were grown in pots filled with an Ultisol with two levels of P: control, and addition of 50 mg P kg–1. The main P fractions were the inorganic soluble (44%) and P in RNA (26%). Addition of P increased the total P concentration, following the order A. affinis (140%) > P. notatum (116%) > A. lateralis (81%) > A. laevis (21%). In conclusion, the species A. affinis and P. notatum responded to P fertilization with high variation and accumulating P in less-structural chemical forms, such as inorganic P. The species A. lateralis and A. laevis showed low variation in the concentration of P forms, with higher P concentrations in structural forms.

Barteria fistulosa and B. dewevrei, central African rain-forest trees, provide nesting cavities for Tetraponera aethiops and T. latifrons ants, respectively, which protect them against herbivores. To compare protection efficiency between these two symbioses, for 20 plants of each species in two sites in Gabon we measured the time elapsed before ants reached a focal leaf, for host leaves that were undisturbed, damaged (cut with scissors) or subjected to slight vibration (mimicking such damage), and for damaged leaves of the non-host Barteria species. Tetraponera aethiops displayed stronger protective behaviour than did T. latifrons. Time to reach a damaged host leaf (4.5 ± 2.6 min, mean ± SD) did not differ significantly from time to reach a leaf subjected to slight vibration (5.2 ± 3.0 min) for T. aethiops, but response to a leaf subjected to slight vibration (9.5 ± 1.9 min) was significantly slower than that to a damaged leaf (7.8 ± 1.9 min) for T. latifrons. The faster response of T. aethiops to slight vibration may have masked a response of this species to chemical signalling. Both ants reached damaged host leaves faster than damaged leaves of the non-host Barteria sp., indicating host plant specificity in ant responses.

Stand structure and tree species diversity patterns were examined plot-wide and among four topographically defined habitats (plateau, cliff, low plain and depressions) in a 120-ha permanent plot in an Acacia-dominated savanna in Mpala Ranch, central Kenya. The four habitats were defined by clustering the 3000 quadrats of 20 × 20 m in the plot based on their altitude, slope and convexity. Structural and floristic differences among the four habitats were examined and species-habitat associations were tested for the 30 most abundant species using torus translation randomization tests. The plot included 113 337 trees in 62 species with diameter at knee height ≥ 2 cm (18.4 species ha−1), 41 genera and 23 families. Fabaceae with the genus Acacia were the dominant family, followed by Euphorbiaceae and Ebenaceae. Tree density and basal area were twice as high on low plain and depressions than on the plateau. Species richness was highest in the cliff and was seven times higher than in the adjacent plateau. Half of the species assessed showed significant positive associations with one habitat and 21 showed significant negative associations with at least one habitat. The variation in stand structure and tree species diversity within the Mpala plot shows that topography is among the important drivers of local species distribution and hence the maintenance of tree diversity in savannas.

In 2000, we established a 24-ha plot in Peninsular Thailand to investigate how forest composition, structure and dynamics vary with spatial heterogeneity in resource availability. Detailed soil and topographic surveys were used to describe four edaphic habitats in the plot. Disturbance history was inferred from historical records and floristic analysis. The plot included >119 000 trees ≥1 cm dbh in 578 species, and was recensused in 2010. Species distributions, floristic turnover, stand structure, demographic rates and biomass dynamics were strongly influenced by heterogeneity in soils, topography and disturbance history. Over 75% of species were aggregated on specific edaphic habitats leading to strong compositional turnover across the plot. Soil chemistry more strongly affected species turnover than topography. Forest with high biomass and slow dynamics occurred on well-drained, low fertility ridges. The distribution and size structure of pioneer species reflected habitat-specific differences in disturbance history. Overall, above-ground biomass (AGB) increased by 0.64 Mg ha−1 y−1, from 385 to 392 Mg ha−1, an increase that was entirely attributable to recovery after natural disturbance. Forest composition and stand structure, by reflecting local disturbance history, provide insights into the likely drivers of AGB change in forests. Predicting future changes in tropical forests requires improved understanding of how soils and disturbance regulate forest dynamics.

Determining the effects of light pollution on tropical bat communities is important for understanding community assembly rules in urban areas. Studies from temperate regions suggest that, among aerial insectivorous bats, fast-flying species that forage in the open are attracted to artificial lights, whereas slow-flying species that forage in cluttered environments avoid those lights. We measured aerial insectivore responses to light pollution in a tropical cloud forest to test this hypothesis. Bat echolocation was recorded at 20 pairs of light and dark sites in Monteverde, Costa Rica. Foraging activity was higher at artificially lighted sites than dark sites near the new moon, especially around blue-white fluorescent lighting. Most recorded bat species showed increased or unchanged activity in response to light, including some slow-flying and edge-foraging bats. This finding suggests that, contrary to the evaluated hypothesis, flight speed and foraging mode are not sufficient to determine bat responses to artificial lights in the tropics. Two bat species showed decreased activity at light sites, and a low species evenness was recorded around lights, particularly fluorescent lights, compared with dark sites. As in the temperate zone, light pollution in the tropics seems to concentrate certain bat species around human-inhabited areas, potentially shifting community structure.

Dipterocarpaceae, a dominant family of trees in South-East Asian tropical forests, are remarkable in that they exhibit supra-annual mass-flowering events. The flowering patterns are related to the El Niño Southern Oscillation, but the mechanism that precipitates mass-flowering is still debated. Here, we test if a cumulative-trigger model that tracks resource availability, specifically light, may better explain dipterocarp phenology than a direct-environmental-trigger mechanism. Using 11 flowering time series with an average length of 29 y and variety of candidate predictor variables (precipitation, cloud cover, minimum temperature and El Niño indices) we could not find a plausible direct-environmental-trigger (median AUCs across regions from 0.53 to 0.57 indicating near random predictions). The cumulative-trigger model based on El Niño indices showed better predictive results (AUC 0.67), which could further be improved by resetting the resource at known flowering events (AUC 0.76). Additional support for a cumulative-trigger model comes from the observation that regional differences in the time of year of peak flowering correspond to where El Niño effects are strongest. We conclude that cumulative resource tracking is an evolutionary plausible trigger mechanism that has other primary evolutionary advantages, such as predator satiation.

In many plants, the defence systems against herbivores are induced, and may be involved in recruiting the natural enemies of herbivores. We used methyl jasmonate, a well-known inducer of plant defence responses, to manipulate the chemistry of Ficus hahliana along a tropical altitudinal gradient in order to test its ability to attract the enemies of herbivores. We examined whether chemical signals from MeJA-treated trees (simulating leaf damage by herbivores) attracted insect enemies in the complex settings of a tropical forest; and how this ability changes with altitude, where the communities of predators differ naturally. We conducted the research at four study sites (200, 700, 1700 and 2700 m asl) of Mt Wilhelm in Papua New Guinea. Using dummy plasticine caterpillars to assess predation on herbivorous insect, we showed that, on average, inducing plant defences with jasmonic acid in this tropical forest increases predation twofold (i.e. caterpillars exposed on MeJA-sprayed trees were attacked twice as often as caterpillars exposed on control trees). The predation rate on control trees decreased with increasing altitude from 20.2% d−1 at 200 m asl to 4.7% d−1 at 2700 m asl. Predation on MeJA-treated trees peaked at 700 m (52.3% d−1) and decreased to 20.8% d−1 at 2700 m asl. Arthropod predators (i.e. ants and wasps) caused relatively more attacks in the lowlands (200–700 m asl), while birds became the dominant predators above 1700 m asl. The predation pressure from birds and arthropods corresponded with their relative abundances, but not with their species richness. Our study found a connection between chemically induced defence in plants and their attractivity to predators of herbivorous insect in the tropics.

We monitored native forest regeneration over 11 y in a eucalyptus plantation and compared it with the neighbouring primary forest. For the plantation forest, we hypothesized that species richness, density, basal area and densities of old-growth species would increase over time, and compared to the primary forest, plantation forest would have higher species richness and density, but lower densities of old-growth species. In 2016, we repeated the protocol of a study that sampled the plantation forest in 2005, with thirty 10 × 10-m plots and enumerating trees (≥10 cm diameter), saplings (>1 to <10 cm diameter) and seedlings (<1 cm diameter). In the plantation forest, for trees, the species richness, density of gap, bird-dispersed and mammal-dispersed species increased by 67%, 156%, 116% and 238% respectively; whereas for saplings, density of gap, bird-dispersed and small-seeded species declined by 45.2%, 51% and 18.2% respectively over time; and seedling densities did not change across functional groups. Stand basal area increased by 80.1% in the plantation forest. The primary forest had 446% greater density of closed-canopy trees compared with plantation forest. Contrary to our prediction, the plantation forest did not accumulate significant densities of old-growth species over time, probably due to demographic filters that prevent them from attaining maturity.

Many plant traits might explain the different ecological and network roles of fruit-eating birds. We assessed the relationship of plant productivity, fruit traits (colour, seed size and nutritional quality) and dietary specialization, with the network roles of fruit-eating birds (number of partners, centrality and selectivity) in the Atlantic Forest, Brazil. We classified bird species according to their dietary specialization into three categories: obligate, partial and opportunistic fruit-eating birds. To test if network roles changed according to dietary specialization, fruit productivity and traits, we used a generalized linear model analysis. The selected 14 species of plant interacted with 52 bird species, which consumed 2199 fruits. The most central and generalist fruit-eating bird, Turdus albicolis, interacted with plants that produced more fruits, such as Miconia cinerascens, and had, on average, larger seeds, such as Myrcia splendens. The most selective birds interacted with fruits with a higher concentration of lipids and less intense colour, and plants that produced fewer fruits. Obligate fruit-eating birds, such as Patagioenas plumbea, were more selective than partial and opportunistic birds. Different plant traits are therefore related to the different network roles of fruit-eating birds in the Atlantic Forest, which are also dependent on bird dietary specialization.

Habitat loss and fragmentation are major threats to biodiversity worldwide, and little is known about their effects on bats in Africa. We investigated effects of forest fragmentation on bat assemblages at Kakamega Forest, western Kenya, examining captures at edge and interior locations in three forest fragments (Buyangu, 3950 ha; Kisere, 400 ha; and Malava, 100 ha) varying in forest area and human-use regimes. Basal area, canopy cover, tree density and intensity of human use were used as predictors of bat abundance and species richness. A total of 3456 mist-net hours and 3168 harp-trap hours resulted in the capture of 4983 bats representing 26 species, eight families and four foraging ensembles (frugivores, forest-interior insectivores, forest-edge insectivores and open-space insectivores). Frugivores were frequently captured at the edges of the larger, better-protected forests, but also in the interior of the smaller, more open fragment. Forest-interior insectivores and narrow-space foragers predominated in the interiors of larger fragments but avoided the smallest one. Forest specialists showed positive associations with forest variables (canopy cover, basal area and tree density), whereas frugivores responded positively to the human-use indicators. On these bases, specialist species appear to be especially vulnerable to forest fragmentation.

Temporal and spatial scarcity of water in semi-arid and seasonal ecosystems often leads to changes in movements and behaviour of large vertebrates, and in the neotropics this dynamic is poorly understood due to logistical and methodological limitations. Here we used camera trapping to elucidate variation in patterns of seasonal use of waterholes and pathways by 10 large-mammal and four large-bird species in the dry forest of north-western Costa Rica. From 2011 to 2015, we deployed trail cameras at 50 locations, including waterholes and three types of pathway (roads, human trails and animal paths). We used Generalized Linear Models to evaluate the effect of location and seasonality on the rates at which independent photographs were taken. We found interacting effects of location and seasonality for the capuchin monkey (Cebus capucinus), the tiger heron (Trigrisoma mexicanum), the white-tailed deer (Odocoileus virginianus) and the tapir (Tapirus bairdii) suggesting that these species were the most influenced by waterholes during the dry season. Comparison of waterhole sites and specific types of pathways (roads, animal paths and human trails) showed that location influenced photo-capture rates of almost all species, suggesting a useful insight to avoid and account for bias in camera trap studies. Furthering our ecological understanding of seasonal water regimes and large vertebrates’ behaviours allow for better understanding of the consequences of climate change on them.

Nitrogen-fixing plants provide critical nitrogen inputs that support the high productivity of tropical forests, but our understanding of the ecology of nitrogen fixers – and especially their interactions with herbivores – remains incomplete. Herbivores may interact differently with nitrogen fixers vs. non-fixers due to differences in leaf nitrogen content and herbivore defence strategies. To examine these potential differences, our study compared leaf carbon, nitrogen, toughness, chemical defence and herbivory for four nitrogen-fixing tree species (Inga oerstediana, Inga sapindoides, Inga thibaudiana and Pentaclethra macroloba) and three non-fixing species (Anaxagorea crassipetala, Casearia arborea and Dipteryx panamensis) in a lowland tropical rain forest. Leaf chemical defence, not nutritional content, was the primary driver of herbivore damage among our species. Even though nitrogen fixers exhibited 21.1% higher leaf nitrogen content, 20.1% lower C:N ratios and 15.4% lower leaf toughness than non-fixers, we found no differences in herbivory or chemical defence between these two plant groups. Our results do not support the common hypotheses that nitrogen fixers experience preferential herbivory or that they produce more nitrogen-rich defensive compounds than non-fixers. Rather, these findings suggest strong species-specific differences in plant–herbivore relationships among both nitrogen-fixing and non-fixing tropical trees.

Habitat fragmentation is a major cause of biodiversity loss in agricultural landscapes. Studying habitat connectivity in fragmented landscapes is therefore pivotal for better understanding the factors that shape faunal communities in anthropogenic landscapes. Amphibians have limited dispersal abilities, strong site fidelity and often perform seasonal movements to reach relatively distant breeding habitats. This calls for a better knowledge of which landscape features might promote dispersal, especially in crops. We applied graph-theoretic network analyses to a set of 35 waterbodies embedded in 10 rice fields in a savanna–rain forest ecotone, Tocantins, Brazil, to assess the importance of landscape features (forest patches, waterbodies) for anuran functional connectivity within the entire network. We used taxonomic, functional and phylogenetic diversity as proxies of anuran functional connectivity (i.e. dispersal ability intrinsic to the taxa), based on previous associations uncovered between species diversity metrics and landscape connectivity. We found that, assuming individuals belonging to each of the 14 amphibian species recorded are unable to disperse over 800 m, forest and waterbody area and abundance are the most important predictors of waterbody importance for connectivity. Hence, pond network connectivity for amphibians in rice crops depends on (1) abundant and large forest patches in the area surrounding waterbodies, and (2) a network of abundant waterbodies.

Primates are important seed dispersers in natural ecosystems and agro-ecosystems, but the latter scenario remains under-studied. The degree to which primates favour plant regeneration greatly depends on post-dispersal processes. The main objective of this study was to compare patterns of seed/seedling fate and seedling recruitment in two habitats of the black howler monkey (Alouatta pigra Lawrence 1933), rustic cocoa and rain forest, and two types of seed-deposition locations, monkey latrines and control locations. Field experiments were carried out within the non-overlapping home ranges of six monkey groups, three in cocoa and three in forest. Seed and seedling fates were assessed for one focal tree species, Brosimum lactescens. The probabilities of seed survival (0.52), germination (0.72), seedling establishment (0.73) and early seedling survival (0.38) were not affected by habitat or seed-deposition location. Late seedling survival was similar in the two habitats but was higher in control locations (0.22) than in latrines (0.09). In cocoa, 4641 seedlings of 59 species were recorded, in forest 3280 seedlings of 68 species. Seedling recruitment was similar in both habitats, but latrines had higher densities than control locations. The importance of agro-ecosystems with low management intensity for the maintenance of ecological processes in anthropogenic landscapes is discussed.

Large frugivores provide critical seed dispersal services for many plant species and their extirpation from forested ecosystems can cause compositional shifts in regenerating plant cohorts. Yet, we still poorly understand whether large seed-dispersers have complementary or redundant roles for forest regeneration. Here, to assess the functional complementarity of large-bodied frugivores in forest regeneration, we quantified the effects of varying abundance of hornbills, primates and the forest elephant on the density, species richness and the mean weighted seed length of animal-dispersed tree species among seedlings in five sites in a forest–savanna mosaic in D. R. Congo, while accounting for percentage forest cover and the local presence of fruiting trees. We found that the abundance of primates was positively associated with species richness of seedlings, while percentage forest cover was negatively associated (R2 = 0.19). The abundance of hornbills, the presence of elephants and percentage forest cover were positively associated with mean seed length of the regenerating cohort (R2 = 0.13). Spatially explicit analysis indicated that some additional processes have an important influence on these response indices. Primates would seem to have a preponderant role for maintaining relatively high species richness, while hornbills and elephant would seem to be predominantly responsible for the recruitment of large-seeded trees. Our results could indicate that these taxa of frugivores play complementary functional roles for forest regeneration. This suggests that the extirpation of one or more of these dispersers would likely not be functionally compensated for by the remaining taxa, hence possibly cascading into compositional shifts.

The maintenance of biodiversity in tropical forests is thought to be dependent on fine-scale mechanisms of niche partitioning that allow species to coexist. This study examined whether three species of short-tailed fruit bat that co-occur at a lowland tropical forest site in Costa Rica (Carollia castanea, C. perspicillata, C. sowelli) avoid inter- and intraspecific competition through dietary specialization on species in the genus Piper. First, dietary composition was examined using faecal samples (N = 210), which yielded three main findings: (1) bat species and sexes vary in overall reliance on fruits of Piper, with a higher percentage of seeds of Piper detected in the diets of C. castanea (98.2%) and females (91.5%); (2) adults and juveniles partition species of Piper by habitat, with a lower percentage of mid- to late-successional species of Piper detected in adults (20.8%); and (3) overall, there is a strong dietary overlap among and within the three species of Carollia. Second, controlled choice experiments were conducted with individual bats (N = 123) to examine preferences for different species of Piper. These results indicated few differences in Piper preference based on bat species, sex, age class or reproductive status, suggesting preference is not the primary mechanism shaping the observed differences in dietary composition. Overall, the dietary composition and preference similarities suggest there is strong competition both among and within the three species of Carollia for food resources.

Although extrafloral nectar (EFN) is a key food resource for arboreal ants, its role in structuring ground-nesting ant communities has received little attention, despite these ants also being frequent EFN-attendants. We investigated the role of EFN as a driver of the spatial structure of ground-nesting ant communities occurring in dry forest in north-eastern Brazil. We examined the effects on this relationship of two global drivers of biodiversity decline, chronic anthropogenic disturbance and climate change (through decreasing rainfall). We mapped EFN-producing plants and ant nests in 20 plots distributed along independent gradients of disturbance and rainfall. We categorized ant species into three types according to their dependence on EFN: heavy users, occasional users and non-users. We found a strong relationship between ant dependence on EFN and nest proximity to EFN-producing plants: heavy-users (mean distance 1.1 m) nested closer to EFN-producing plants than did occasional users (1.7 m), which in turn nested closer to EFN-producing plants than did non-users (2.3 m). Neither disturbance nor rainfall affected the proximity of heavy-user nests to EFN-producing plants. Our study shows for the first time that EFN is a key driver of the spatial structure of entire communities of ground-nesting ants.

To better understand the role of seed banks in ecological succession of dry forests, we compared similarities between vegetation and seed banks and assessed the relative contributions of seed dispersal and persistence in chronosequences in the Brazilian semi-arid region. To sample the standing vegetation and the seed bank, we collected data in three sites with three successional ages in each one (5 y, 25 y and 45 y). A total of 180 soil samples (three sites × three successional ages × 10 plots × two components) were collected. The composition of the seed bank was assessed by the seedling emergence method. Of 166 species identified in the standing vegetation, only 50 (30.1%) were also present in the seed bank, resulting in low similarity (Jaccard index = 0.02–0.21) and reflecting the rarity of woody species and the dominance of annuals (71% of richness). The relative importance of seed persistence and seed dispersal to seed banks composition were balanced in most cases (difference was not rejected in four out six comparisons). Those results suggest that seed banks in tropical dry forests are largely the result of high dispersal rates and the persistence of allochthonous annual species that contribute to decoupling seed bank and vegetation composition.