Few studies have contrasted faunal communities between flooded and unflooded tropical forests, and such attempts have largely been restricted to a few taxonomic groups. We present the first comparison of the composition and structure of an entire assemblage of mid-sized to large-bodied mammals in adjacent unflooded (terra firme) and flooded (várzea) forests of central-western Amazonia. We extend this comparison to 13 other terra firme and várzea forest sites in order to examine the fundamental dichotomy between mammal communities in these Amazonian environments. We found a consistently impoverished fauna in várzea environments both in terms of primates and other non-volant mammals, although primate density and biomass was substantially higher in várzea than in terra firme. The average Bray–Curtis mammal community dissimilarity between terra firme and várzea forests was 74%, whereas mean dissimilarity within várzea and terra firme samples was 40% and 39%, respectively. The results seem to be largely a function of high habitat heterogeneity and floristic diversity in terra firme and the physical connectivity and proximity of várzeas to adjacent terra firme forests. We suggest that inundated forests should be set aside as a crucial complement to Amazonian reserves dominated by terra firme forests in future biodiversity conservation planning.

Herbivory is important in tropical woody plants, but the few data available suggest that rates of herbivory are mostly low in epiphytes. We quantified herbivory at the community level in five bromeliad, three orchid and five fern species of a Mexican humid montane forest. Leaf area loss was <1.5% in bromeliads and orchids, but much higher (7–20%) in ferns. Damage was positively correlated with leaf nitrogen content but not with leaf life span. In contrast to low leaf damage, many bromeliads were infested by curculionid larvae feeding on the meristematic tissue at the ramet base, and we estimate that this accounts for 18 and 31% of ramet and shoot death of large individuals of Tillandsia punctulata and T. deppeana, respectively. Herbivory in flowers, capsules or inflorescence stalks reduced fecundity by c. 14–18% in three of the five bromeliads and by 90% in the orchid Lycaste aromatica, but had little effect on the other species. These data show that even if the leaf area consumed is indeed low in epiphytic orchids and bromeliads, the less conspicuous damage done to reproductive organs and meristematic tissue can have a strong effect on fecundity and survival.

We compared seedlings of sandy-soil specialist species (Dryobalanops aromatica and Scaphium borneense) and clay-rich-soil specialist congeners (D. lanceolata and S. longipetiolatum) in a tropical rain forest in Lambir Hills National Park, Malaysia, to determine whether variations in belowground seedling architecture and allometry were related to edaphic specialization. A convergent trait that was phylogenetically independent across the two genera was the presence of a deeper tap-root at any height and any root biomass in sandy-soil specialists than in clay-rich-soil specialists. This trait was fixed independently of the edaphic conditions in which the trees actually grew. Finer-textured soils generally have better water-holding capacity; we concluded that seasonal water limitation would be more severe in sandy soils than in clay-rich soils, and that water limitation would provoke convergence in seedling root depth among species with the same edaphic preferences. All significant differences found in interspecific comparison within Dryobalanops were consistent with the water-availability hypothesis; the sandy-soil specialist had larger root biomass at any total biomass and had smaller leaf biomass at any root biomass than the clay-rich-soil specialist. However, for Scaphium this was not the case, suggesting that factors other than water-limitation may also underlie seedling allometric relationships.

The composition, structure and reproductive phenology of a shrew community were investigated for 1 y at two neighbouring sites in an undisturbed African forest of south-western Gabon. We captured 717 shrews, belonging to four genera and 10 species. The data were analysed to answer three main questions: (1) to what extent does the shrew abundance vary seasonally? (2) is there a shift in species dominance over time? and (3) does the intensity of breeding activity vary seasonally? The number of species captured varied seasonally and tended to be least during the period of minimal trap success. Trap success for the four most abundant species (Sylvisorex johnstoni, Crocidura batesi, Paracrocidura schoutedeni and Sylvisorex ollula) varied seasonally with a minimum around the long dry season. Sylvisorex johnstoni remained the dominant species throughout the year. Seasonal variation in trap success of shrews might be related, at least partly, to their reproductive characteristics. Litter size, based on embryo counts, ranged from 1–4 among the species. Breeding occurred throughout the year, but its intensity was lower during the long dry season corresponding with the period of higher ecological constraints for shrews.

Drip-tips are a common phenomenon in tropical rain forests, often believed to facilitate drainage of water from the leaf surface and, in that way, reduce epiphyll growth. Some authors suggest a function in reducing splash soil erosion, leaching of substances from the leaf, and light reflectance, while other studies did not find any such correlations. We used an experimental approach to test for the effect of drip-tips on the development of epiphyllous lichen communities. Artificial leaves with and without pronounced drip-tips were exposed in a tropical lowland rain forest at La Selva Biological Station (Costa Rica) for a period of 38 mo, and the physical behaviour of rainwater was tested. On leaves with drip-tips, the water ran off in small, frequent drops 8–30 mm3 in size. On leaves without drip-tips, the water accumulated in the apex region and dripped off periodically in large drops 50–150 mm3 in size. Nevertheless, there was no significant difference in the development of epiphyllous lichen communities on leaves with and without drip-tips, in terms of area covered, species richness and composition. However, leaves without drip-tips had more debris accumulated in the apex region and, at the same time, fewer lichen species present in this region. Thus, while drip-tips do have an influence on how water is channelled off the leaf surface, they do not impair the development of epiphyllous lichen communities, except for the apex region where the presence of drip-tips does in fact enhance, not reduce, the establishment of lichens, by preventing the accumulation of debris. We conclude that, while drip-tips may have an ecological function, this function is unrelated to the development of epiphyllous lichen communities.

Dioecious plant species differ in floral morphology and rewards between females and males. Pistillate flowers on female plants often lack pollen and can be less attractive to pollinators, which can have consequences for the visitation rates of the sexes. We studied the pollination ecology of the dioecious tree Commiphora harveyi in a coastal scarp forest in eastern South Africa. Floral display, visiting insect species, visitation rate and natural fruit set were recorded. Additionally, we pollinated flowers by hand to determine experimental fruit set. We found that male trees had more and larger flowers per inflorescence than female trees. Both sexes produced nectar in low amounts. During 203.5 h of observation we recorded 28 insect species visiting the flowers. No difference in mean visitation rate (0.20 visits per flower h−1) was recorded between the sexes. The daily and seasonal pattern was similar between the sexes. The natural fruit set was low (3.8%) and increased significantly with hand-pollination (45.5%), an indication of pollen limitation. We compared our results with the pollination ecology of C. guillauminii in Madagascar, a dioecious tree species on an island with a depauperate pollinator fauna. This comparison revealed a similar pattern with low visitation rates, low insect diversity and low fruit set, suggesting that this pattern may be more common in dioecious tree species than previously reported in the literature.

Larvae of Plagiometriona aff. flavescens carry a structure on their back made of faeces and exuviae, called faecal shield, which may protect larvae against natural enemies. Previous investigations suggested that the nature of such protection was chemical. To test if chemicals found in the faecal shield of Plagiometriona aff. flavescens provided defence for larvae, experiments in the field and in the laboratory (using the ant Camponotus crassus, and chicks Gallus gallus as model predators) were undertaken. Both field and laboratory experiments showed that live larvae with faecal shields, as well as baits treated with faecal shield extracts, were rejected by predators, confirming the chemical nature of this kind of defence.

The induction of carbon-based secondary metabolites in leaves following damage has been proposed to be a result of a shift in the carbon:nutrient balance, when growth is limited by nutrients in relation to carbon. Here we test this hypothesis using seedlings of a tropical tree, Shorea leprosula (Dipterocarpaceae). In the short term, we analysed the phenolic content of leaves 7 d after damage on seedlings grown under differing light and nutrient treatments. In the long term, we examined the effect of nutrients, over 12 mo, on leaf phenolic concentration and seedling growth. In both the long and short term, levels of phenolics increased in damaged leaves under low nutrient treatments. No changes in leaf phenolics were detected under high nutrient regimes, or in the short term under low light. In addition, it was found that defoliation of seedlings in high-nutrient environments led to greater rates of leaf production than in undamaged seedlings, suggesting compensation.

Guiera senegalensis tolerates repeated cutting and pruning to which it is increasingly subjected at the onset of each cropping period, and one to three times during the annual cropping period (June–September). It responds by profusely branching at the shrub base. The topographic and geomorphic influences, and the effect of clearing on the relationships between shrub density, mean individual above-ground biomass and leaf water status were analysed for seven fallow sites. They were sampled 75 km east of Niamey in Niger. Surprisingly, shrub density and mean individual above-ground biomass were highest in the sites that had been recently in fallow and intensively cultivated prior to crop abandonment. Stand above-ground biomass was also positively related to mean predawn and daily minimum leaf water potentials. Consequently, in the studied G. senegalensis stands, above-ground biomass appeared to be controlled by water availability – rainfall, runoff, infiltration – rather than by cropping intensity. Anisohydric stomatal regulation, resulting in large safety margins from critical transpiration, was inferred from the diurnal amplitude of leaf water potential during the dry season. The plant physiological resistance to water stress combined with its population adjustment in density and growth contributes to the sustainable dominance of G. senegalensis.

Spatial variation in canopy structure induces highly variable patterns of light availability for juveniles and understorey trees (Nicotra et al. 1999, Oberbauer et al. 1988, Tang et al. 1999). In the heterogeneous light environment, plasticity in resource use is essential for survival of juveniles and hence maintenance of populations (Valladares et al. 2000). One of the most striking characteristics of plants in their response to a given resource availability is their capacity to change morphological traits (Küppers 1994). Previous studies have attempted to understand the significance of morphological adaptations in their contribution to competitive ability, focusing on crown form (Kohyama 1987, Sterck et al. 2003), branching pattern (King 1998), shoot architecture (Canham 1988) and leaf shape (King & Maindonald 1999, Takenaka 1994, Yamada et al. 2000). Several studies have investigated the changes in morphology of saplings or seedlings growing under different light availability across canopy gaps (Ackerly & Bazzaz 1995, King 1994, Valladares & Pearcy 1998). However, the phenotypic plasticity in morphology of saplings adapting to the fluctuation of light availability has been investigated less (Blundell & Peart 2001, Poorter & Werger 1999).

In general, amphibian larvae dispose of nitrogenous wastes as ammonia and change to urea excretion during metamorphosis (Balinsky 1970). Ammonia excretion, however, poses a problem for tadpoles and embryos that live in a limited volume of fluid because it is toxic in higher concentrations. One solution is urea excretion or ureotelism. In amphibians it occurs in species with terrestrial modes of reproduction when larvae develop within the uterus as in the ovoviviparous Salamandra salamandra (Schindelmeiser & Greven 1981), when embryos develop in foam nests as in Leptodactylus bufonius (Shoemaker & McClanahan 1973), or when offspring develop in brood pouches as in Gastrotheca riobambae (Alcocer et al. 1992).

Many tropical pioneer species depend on the presence of high seed densities in the soil for successful recruitment following canopy disturbance (Cheke et al. 1979, Dalling & Hubbell 2002, Guevara Sada & Gómez Pompa 1972, Whitmore 1983). However determinants of variation in the composition and abundance of soil seed banks remain poorly understood. Seed bank densities can be affected by rates of seed predation and pathogen infection on the surface and in the soil, by intrinsic rates of loss in viability following dispersal, and by variation in the timing and duration of fruit production (Dalling et al. 1997, Garwood 1983, Murray & Garcia 2002). Here we compare seasonal fluctuations in seed bank density in five Panamanian forests varying in elevation and seasonality of precipitation (Table 1). We predict that lowland forests should show stronger intra-annual fluctuation in seed bank densities than montane forests because seed production and loss rates should be higher under conditions of greater resource availability, and where consistent high temperatures support greater abundance or activity of seed predators and pathogens (Brühl et al. 1999). Secondly, among lowland sites, we predict greater fluctuations in seed bank densities at drier, more seasonal sites where seasonally favourable conditions for seedling recruitment may select for interspecific synchrony in fruit production (Daubenmire 1972, Garwood 1983).

Levels of leaf damage due to insect folivory have been investigated in forests of different latitudes all over the world, but most research has concentrated on a few common forest types. Most studies of insect herbivory were conducted in (sub)tropical rain forests (Barone 1998, Basset 1996, Coley 1983, Lowman 1985), or in temperate forests (Landsberg & Ohmart 1989, Lowman & Heatwole 1992). In contrast, little is known about insect folivory of woody plants in tropical savannas (Fowler & Duarte 1991, Marquis et al. 2001, Ribeiro 2003, Stanton 1975), and no such data are available for the West African savanna ecosystem (Andersen & Lonsdale 1990). Savannas cover about 40% of the land surface of Africa and 20% of the world (Scholes & Walker 1993), and savanna trees may host considerable numbers of insects, including many herbivores (Grant & Moran 1986, Mody et al. 2003). Therefore, insect herbivory can be considered a potentially important aspect of plant–animal interactions for vast areas of tropical ecosystems, where it has been studied remarkably rarely so far.

Beetles of the family Cerambycidae can girdle stems and larvae bore live or dead stems of their host plants (Linsley 1961), and when they use active tissues (e.g. xylem), can affect the development and survivorship of their hosts (Nowak et al. 2001). Moreover, borer attack can rapidly stress host plants (Matter 2001), often killing them (Nowak et al. 2001). Consequently, they can cause changes in size structure of the plant population, depending on the intensity of attack and plant survival rates (Caraglio et al. 2001). Cerambycids of the genus Oncideres (Lamiinae) present the most specialized behaviour in host-plant use, in which the female cuts stems with its mandibles and prepares the oviposition site above the cut portion by perforating the bark and then inserting eggs (Caraglio et al. 2001, Rice 1989, 1995).

Some tree species exhibit large year-to-year variation in seed production, a phenomenon known as masting (Kelly 1994, Kelly & Sork 2002). Even in tropical rain forests, in which the climate is suitable for plant growth all year round with little seasonal variation (Whitmore 1998), there are many reports of masting (Appanah 1993, Hart 1995, Newbery et al. 1998, Newstrom et al. 1994, Wheelwright 1986). In particular, Dipterocarpaceae, the dominant family in lowland mixed dipterocarp forests in South-East Asia, undergo mast fruiting following mass-flowering with strong interspecific synchronization in aseasonal western Malesia (Appanah 1985, 1993; Ashton 1989, Ashton et al. 1988, Curran et al. 1999, Janzen 1974, Medway 1972, Sakai et al. 1999, Whitmore 1998, Wood 1956). In mixed-dipterocarp forests, dipterocarp species contribute more than 70% of the canopy biomass (Bruenig 1996, Curran & Leighton 2000). Masting of dipterocarp species is therefore likely to have a major impact on animal populations, and also on the nutrient cycle in such forest ecosystems by causing fluctuations in the availability of resources (Sakai 2002).