The oceans have shown a recent rapid and accelerating rise in temperature with, given the close link between temperature and marine organisms, pronounced effects on ecosystems. Here we describe for the first time a globally synchronous pattern of pulsed short period (~1 year long) emanations of warm sea surface temperature anomalies from tropical seas towards the poles on the shelf/slope with an intensification of the warming after the 1976/1977, 1986/1987 and 1997/1998 El Niños. On the eastern margins of continents the anomalies propagate towards the poles in part by largely baroclinic boundary currents, reinforced by regional atmospheric warming. The processes contributing to the less continuous warm anomalies on western margins are linked to the transfer of warmth from adjacent western boundary currents. These climate induced events show a close parallelism with the timing of ecosystem changes in shelf seas, important for fisheries and ecosystem services, and melting of sea-ice.

The pink shrimp (Farfantepenaeus paulensis) is a very important fishery resource in southern/south Brazil. A great part of the total capture at these regions results from the artisanal fishery activity in Patos Lagoon estuary. The study of this species has importance because it is the main source of income for the communities of artisanal fisheries. This paper relates the climatic effects and the size of the species' adult stock with the harvest of pink shrimp in the estuary, in order to determine the influence of these variables on annual landings (t).

The soft-bottom zoobenthic community structure of Izmir Bay was examined seasonally at eight stations (depth-range: 19–67 m) in 2009. A total of 427 species were found. Polychaeta had the highest number of species (50% of total species) and individuals (75%), whereas Echinodermata possessed the highest biomass (47%). The number of species varied from 3 to 79 (0.1 m−2), the density from 60 to 5360 ind.m−2, and the biomass from 1 to 530 g.m−2. The most numerically dominant species were the polychaetes Aricidea claudiae, Streblospio gynobranchiata, Levinsenia demiri and Sternaspis scutata. The distribution of zoobenthos was strongly related to spatial differences in total organic carbon, sediment texture and depth among different regions of the bay rather than temporal differences among seasons. However, significant seasonal variability in community structure (mainly differences in the relative abundance of species) was present. The inner region of the bay can be classified as ‘poor’ or ‘bad’ based on the results of biotic indices (H′, AMBI, m-AMBI and BENTIX). Among biotic indices, only H′ and m-AMBI appeared to be capable of explaining the bay's benthic quality status. Thirteen alien species were also found. Streblospio gynobranchiata, Prionospio pulchra, Pseudopolydora paucibranchiata and Polydora cornuta formed dense populations in the inner most polluted part of the bay and are considered to be new pollution indicator species in the eastern Mediterranean Sea.

We identified and quantified the benthic macrofauna associated with decomposing leaves of Rhizophora mangle and Laguncularia racemosa, to observe the differences in the abundance and composition of macrofauna between these mangrove species, and to examine whether the abundance and composition of organisms changed with different stations and collection times. Benthic macrofauna, mainly polychaetes and amphipods, were recorded from the fifth day after the installation of the experiment. Annelids including Oligochaeta and Polychaeta were the most numerous group. Crustacea were represented by peracarids (Amphipoda and Tanaidacea) and decapods. Of Hexapoda, only juvenile forms and pupae were present. The most abundant polychaete species was Perinereis brevicirrata, followed by Capitella cf. capitata, Heteromastus filiformis and Neanthes succinea. In one-way analysis of variance (ANOVA) there were no statistical differences between the macrofauna of mangrove species, seasons, or collection times, except among collection times for R. mangle litter bags. Two-way ANOVA showed homogeneity for macrofauna abundance between the groups of collection times for both mangrove species. The richness was similar for R. mangle litter bags, and showed a significant difference for L. racemosa. Abundance and richness were also similar between the mangrove species. The colonization of detritus by benthic invertebrates followed a successional sequence during the decomposition process. This suggests that the density of these organisms and their foraging behaviour affected the decomposition rates of leaves of R. mangle and L. racemosa.

Temporal variation of hyperiid amphipod structure assemblages was studied on Isla Gorgona, eastern tropical Pacific (ETP) off Colombia between September 2005 and August 2006. Forty-six species were found during the entire sampling period: Hyperioides sibaginis, Lestrigonus bengalensis, Phronimopsis spinifera, Tetrathyrus forcipatus and Paralycaea gracilis dominated the assemblage, representing 92%. The dendogram based on the Bray–Curtis similarity index showed that the hyperiid assemblages were separated into two groups, which did not coincide with the seasonality described for the ETP (wet versus dry season). Rather, groups comprised wet (May to November) and dry season months (December to April). The first group included November, December, February and March. During these months, significantly higher hyperiid richness, diversity and abundance were found, although colder subsurface water temperatures in Gorgona were registered only during February and March. The other group included May to October and January, and was characterized by lower hyperiid diversity and abundance values. Significant correlations were found between hyperiid abundance and the possible gelatinous zooplankton hosts (medusae, siphonophores and salps). This study contributes to increasing knowledge of the zooplankton community in the Panama Bight, as well as of a poorly studied group in the ETP.

Deep-water corals are known to provide essential habitat for fish and invertebrates along the continental slope in different areas of the world, offering prey to coral predators, protection or attachment substrate to other suspension feeders. In the Mediterranean Sea the coral Isidella elongata (Esper, 1788) characterizes a facies of bathyal compact mud substrates between 500 and 1200 m depth. Based on 4 experimental surveys carried out between 1985 and 2008, we obtained quantitative data on the fauna associated with live coral stands. We show that species richness of invertebrates and crustaceans, as well as abundance and biomass of crustaceans, is higher in areas with large stands of the coral. Some commercial fishery species are also more abundant or reach larger sizes in areas with high density of the coral, particularly the red shrimps Aristeus antennatus (Risso, 1816) and Plesionika martia (A. Milne Edwards, 1883). Trawling over I. elongata facies causes direct impacts on the biological assemblages by removing the habitat-forming corals, decreasing invertebrate species diversity and negatively affecting fisheries production in the long term.

Distributions of deep-sea fish, benthic invertebrates and the effects of deep-sea bottom trawling were studied based on data collected in 2005 from a joint collaboration survey undertaken between the Spanish Institute of Oceanography and a deep-sea trawler on the Hatton Bank (north-east Atlantic). A total of 163 valid bottom trawl hauls (600–1600 m) were analysed. The main trawlable grounds were located on the sedimentary seabed of the western flank of the bank (Hatton Drift). Grenadiers and smoothheads were predominant in the trawl catches (67% and 11.8% by weight respectively). Both species were abundant along the western flank. Deep-water sharks accounted for 7.4% of weight, and were abundant along the south-eastern slopes. Chimerids, lotids, morids and other deep-sea species were also taken as by-catch. Grenadiers and deep-water sharks dominated the discards. By-catches of cold-water corals were generally associated with the rocky outcrop and were more abundant at the top of the bank. Abundant by-catches of large sponges, characteristic of sponge-dominated biotopes, were taken from the eastern flank.

Although the practice of recreational feeding of fish by tourists is widespread within marine protected areas (MPAs), the ecological consequences of this activity have received little attention. This research aimed to investigate the influence of artificial feeding on reef fish communities of two Brazilian MPAs. Visual censuses were performed in areas not visited by tourists, in order to characterize the natural community structure of each reef system. In the Maracajaú reefs, the effect of artificial feeding was assessed below a moored floating dock found in the area. Stationary visual censuses were carried out before, during and after the fish feeding activity. In the Maragogi reefs, areas with presence and absence of tourism visitation were established. Transect methodology was employed in each of these areas. On both MPAs, fish feeding was a formal activity and occurred on a daily basis during the course of this study. Within the MPAs, 88 species belonging to 40 families were recorded. In Maracajaú, fish, shrimps and squids were provided by the tourists on the floating dock, which favoured mobile invertebrate feeders, whereas in Maragogi, animal ration and human food were used, causing aggregations of omnivores. Differences were observed in terms of abundance between before and after feeding in Maracajaú and between the control and impacted areas of Maragogi. The data are consistent with fish feeding leading to attraction of determined species, causing an increase in their abundance, also indicating that both the type of food and the extension of activity area are important factors determining the effects on fish communities.

Colonization experiments were conducted in a tropical lagoon (Zanzibar Island, off the coast of Tanzania) to investigate the temporal dynamics and mode of colonization of the harpacticoid copepods community on dead coral fragments. There was fast colonization of the coral fragments attaining a substantial diversity after only two days. The ability to colonize dead coral fragments is thought to be related to the morphology and life style of different harpacticoid species. Phytal taxa (e.g. Tisbidae) were fast colonizers, reaching high abundances during the initial colonization phase. Sediment-associated and eurytopic taxa (e.g. Ameiridae, Miraciidae and Ectinosomatidae) showed lower colonization rates and became the dominant group during the later colonization phase. Most species are able to colonize the coral fragments through the water column. However, colonization along the substrate surface is also considered to be an important colonization mode, especially for sediment-associated taxa, which showed lower colonization rates when migration through the sediment was hindered.

The impact of bottom trawling on cold-water corals (CWC) has been thoroughly studied and shown to be long-lasting; however the effects of bottom longlining on CWC ecosystems have received little attention. The present paper identifies the principal CWC species landed by bottom longlining in Faial (Azores) from 150 to 600 m depth. Data were obtained from a survey of 297 landings during four months coupled with 16 interviews with fishermen. A distinction was made among corals brought on deck directly entangled in the fishing gear (primary by-catch) from corals brought up associated with other larger CWC species or rocks (secondary by-catch). Forty-five (15.2%) of 297 fishing trips surveyed landed coral specimens. The survey recorded 39 different CWC taxa in the by-catch, belonging to five different orders (Scleractinia, Alcyonacea, Antipatharia, Zoanthidea and Anthoathecata). Secondary by-catch included a larger number of species but the total number of corals was in the same order of magnitude for both groups. The taxa most frequently encountered were Leiopathes spp., Errina dabneyiand Dendrophyllia sp. CWC taxa in the by-catch were mostly medium size (10–60 cm), 3-dimensional and branched colonies. Local ecological knowledge of fishermen confirmed that the corals recorded were representative of their past experience and also revealed a general agreement that there has been a decrease of CWC by-catch on traditional fishing grounds. Corals are common by-catch in bottom longline fisheries around the Azores and so conservation measures may be required.

Little is known about the cleaning behaviour of shrimps in comparison to that of cleaner fish, and only recently have cleaner shrimps been shown to remove parasites effectively from coral reef fish. Here we describe patterns of cleaning interactions between Pederson shrimp Ancylomenes pedersoni and fish clients in St Thomas, US Virgin Islands. Clients observed here were members of at least 16 fish families, including three previously unreported client families. Most cleans lasted <20 seconds; surgeonfish were cleaned most frequently, but lizardfish and groupers received the longest cleans. The shrimp formed social groups of varying sizes on individuals of the host sea anemone Bartholomea annulata, which served as the centres of their cleaning stations. The number and duration of cleans per station increased with the number of resident shrimp, however most anemones hosted small groups of fewer than four individuals, while larger groups of up to nine individuals were relatively rare. Some client fish chased away other fish and competitively excluded them from anemone stations. We conclude that these shrimp clean a wide diversity of clients, vary their clean duration with fish identity, and clean more when in large groups. In addition, clients in part control these patterns of interaction by interfering with access to these stations by other clients.

This review examines the biology of the two main cockle species Cerastoderma edule and C. glaucum found in coastal areas around the north-east Atlantic from Norway to Morocco and through the Baltic, Mediterranean and Black Sea. It considers those factors in particular that impact on the overall health and survival of individuals as well as populations. Methods for the discrimination of the species are reviewed as well as the approaches being taken to delineate different populations, which is crucial to appropriately manage individual fisheries. Cockle populations generally undergo sexual maturation during their second summer and sexes are separate. Eggs are pelagic, with larvae being both benthic and pelagic before settling on the sediment and becoming benthic adults. However, data are lacking on basic larval biology and dispersal mechanisms. Data are provided on predator–prey relationships including information on types of food of importance to cockles. Main predators of cockles include brown shrimp, shore crabs, gastropods, polychaetes, fish and a variety of birds and these can be important in structuring cockle populations. Predation of larval cockles by adult cockles through larviphagy can lead to reductions of up to 40% of the population. Cockles are sensitive to a wide range of chemical contaminants but few data are published on impacts on cockles, in particular larval stages. The review concludes with an assessment of future climate change scenarios on cockles and considers some areas of future research required to preserve this ecologically and economically important species.

Carpet shell clam populations on the Tunisian coastline are susceptible to several microbial pathogen challenges. In this study we report the results of five years' surveillance, conducted from January 2004 till June 2009, for detection of Perkinsosis and brown ring disease (BRD). The survey covered three sites of natural populations of Ruditapes decussatus in a Tunisian lagoon, the North Lake of Tunis. Perkinsosis was detected preferentially in winter periods from the external and marine site, BRD was detected more frequently in the summer periods in a more proximal collection site (in the lake) and was positively correlated with concentrations of heterotrophic Vibrio sp. Our results suggest that several factors other than temperature and salinity might explain spatial distribution variability and natural intensities for these infections in carpet shell clam populations.

The dogwhelk Nucella lapillus experienced localized extinction in the 1980s and 1990s due to the use of tributyltin (TBT) antifoulants, causing imposex in females. The aim of this study was to establish the extent of the return of the species across the mainland coast of central southern England as TBT use has been progressively restricted, and to quantify the extent of imposex impact on the populations present. We surveyed from Poole to Selsey where isolated populations had become extinct, and the Isle of Wight where some populations had persisted. We found evidence that since TBT restrictions, recolonization and colonization by N. lapillus has been rapid. By 2007–2008, of the eleven surveyed mainland sites, seven were colonized, although indications of reduced imposex impacts were mixed. Distribution had also extended on the Isle of Wight and populations were larger with less imposex impact in sites with long term populations. The lack of continuous suitable habitat blocks and the hydrodynamic complexity of the region, leads us to hypothesize that recovery has been facilitated by man-made structures which may be acting as ‘stepping stones’. Populations that have become established on engineered structures such as sea walls, breakwaters and rock groynes demonstrate accelerated recovery in the region as TBT in the environment has generally declined. Sites with suitable substrates and food sources near to ports were either not recolonized or had small populations with imposex evident. For species with a short pelagic larval stage or with direct development, population connectivity between patches of harder substrata along hydrodynamically complex coastlines may be greater than previously thought.

Intertidal organisms have long been considered an ideal system to quantify how physical variations determine differential energy allocations in specimens inhabiting environmental gradients such as exposure to wave action. In habitats with differential intertidal wave exposure (sheltered, Sh; and exposed, E) seasonal gonadal and foot weight variations and their associations with exposure and food availability (algae abundance) were determined in the keyhole limpet Fissurella crassa. Gonadal weight is used as a measure of reproduction allocation whereas foot weight is an indirect indicator of energy allocation to survival. RNA:DNA ratio in limpets obtained from Sh and E habitats during the two different seasons was used as an indicator of biosynthetic capability. Our results indicate that algae abundance in E sites was higher in summer and lower in winter compared to Sh sites. In E sites the muscular foot weight of limpet was higher in summer in contrast to Sh sites where F. crassa muscular foot weight of limpet was higher in winter. Gonadal weight in Sh sites was higher in summer and remained constant in winter; whereas in E sites gonadal weight was lower in summer and higher in winter. RNA:DNA ratios indicate that regardless of intertidal wave exposure, F. crassa showed higher biosynthetic capability in summer. Energetic allocation in animals that inhabit sheltered intertidal habitats would support constant allocation towards reproduction. In contrast, animals that inhabit exposed habitats may favour seasonally reproduction allocation at expense of survival.

Metabolic rate is one of the most frequently measured physiological variables and the relationship between oxygen uptake and body mass is one of the most controversial issues in biology. The present study used closed chamber respirometry to compare the oxygen uptake of 32 species of benthic British gastropod molluscs of a wide size-range (from less than 0.001 g to greater than 10 g dry tissue weight). We investigated the effects of body size on the respiratory rate at 10°C to explore the evolutionary and phylogenetically determined patterns of metabolic scaling both among different gastropods groups, and within siphonate and asiphonate caenogastropods. Resting oxygen uptake (O2) increased with body mass (W) with a slope value of 0.6 using both ordinary least squares (OLS) and standard major axis (SMA) where N = 488, over a 6 fold range of body mass. The slopes b of the regression lines relating oxygen uptake to body mass were similar for all heterobranch molluscs and most caenogastropods. Highest mass-specific rates for oxygen consumption were found for the smallest littorinid species. Trophic mode significantly affected the amount of oxygen consumed with higher oxygen uptake in herbivores than other groups, including detritivores and predators. All of the gastropods reduced their oxygen consumption when exposed to declining oxygen conditions; however, about a third of the species exhibited partial regulation at higher oxygen partial pressures. When exposed to 20% normal saturation levels, smaller gastropods respired at approximately 25% of their rates in fully saturated seawater whereas larger species (above 0.1 g dry tissue weight) respired at approximately 35% of the values recorded at full saturation. Our study suggests that a scaling exponent relating O2 to body mass of 0.6 is typical and may be ‘universal’ for gastropods. It is below the 0.75 scaling exponent which has been proposed for ectothermic invertebrates. It is concluded that size does matter in determining the metabolic patterns of gastropods and that the quantity of oxygen consumed and the energy balance of gastropods is affected by activity, food type and exposure to declining oxygen conditions.

The squid Loligo vulgaris has an extended spawning season within the upwelling system off north-west Portugal, and its paralarvae may thus develop under a wide range of environmental conditions. Both temperature and salinity are expected to affect the metabolism of young squid and we tested their effects on growth during the embryonic and post-hatching phase, based on measurements of growth increments in statoliths of juveniles and adults, using generalized additive models. There was no evidence that statolith increments representing early growth become unreadable in adult statoliths. Variability in the statolith size at hatching was weakly but significantly related to the variables in the model. On the other hand, the effects on statolith growth of both sea surface temperature and of sea bottom temperature were significant during early post-hatching life. Thicker increments are deposited in the statoliths of squid living under higher temperatures, which results in summer hatchers having larger statoliths at the age of 90 days. Inspection of the statolith accretion pattern, using a piecewise linear regression method, revealed an ontogenetic shift in increment width, which may be an indication of the age of transition from paralarva to juvenile. On this basis, it is suggested that the planktonic stage lasts 60 or 90 days, depending on whether the paralarvae lived at higher (>15°C) or lower (<15°C) sea surface temperatures. The life strategy under warmer conditions potentially favours survival by reducing the duration of the vulnerable planktonic phase.

Squids of the family Bathyteuthidae have generally been infrequently encountered in their deep-sea habitat. Remotely operated vehicles were used to observe seven individuals in situ in the Monterey Submarine Canyon, CA, USA. One of these was a female Bathyteuthis berryi holding a sheet with approximately 360 embedded embryos. Examination of this female after collection revealed the presence of a seminal receptacle on the buccal membrane. We present some potential costs and benefits of post-spawning egg care, a strategy that is now known for two families of deep-dwelling squids, but may turn out to be more common with the increasing exploration of the deep sea.