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This chapter discusses the requirements for a world to be deemed habitable at a given moment in time (instantaneous habitability), with an emphasis on the availability of energy sources and suitable physicochemical conditions. After a brief exposition of some concepts in thermodynamics, the significance of the molecule ATP (the ‘energy currency’ of the cell) and how it is synthesised in the cell by harnessing chemical gradients is described. The two major sources of energy used by life on Earth (chemical and light energy), and the various possible pathways for utilizing such forms of energy are sketched, most notably photosynthesis and methanogenesis. This is followed by delineating the diverse array of extremophiles that inhabit myriad niches on Earth that would be considered harsh for most life. The mechanisms that permit them to survive the likes of high/low temperatures, pressures, salinity, and radiation doses are reviewed.
Experiments were conducted to assess the impact of crown architecture on light availability beneath the trees, flowering, fruiting, yield and quality of jamun (Syzygium cumini [L.] Skeels). Trees were maintained as control, palmette and open centre crown. Impact was evaluated for three consecutive years, i.e. 2017–2019. Diffuse light beneath the trees ranged from 69.7 ± 2.22 to 45.9 ± 1.45%, whereas direct light varied from 30.4 ± 0.97 to 54.1 ± 1.78%. At flowering and fruit development stage (June), photosynthesis rate (A) in control trees was 12.5 ± 0.43 μmol CO2/m2/s; however, at fruit maturity and dormancy (August), it was only 9.5 ± 0.35 μmol CO2/m2/s. Similarly, in palmette and open centre trees, photosynthesis rate at flowering and fruit development stage was 13.5 ± 0.46 and 15.7 ± 0.54 μmol CO2/m2/s, respectively; whereas at fruit maturity and dormancy, photosynthesis rate dropped to 10.5 ± 0.39 and 11.7 ± 0.43 μmol CO2/m2/s, respectively. Substantial variation in stomatal conductance (gs), vapour pressure deficit (VPD) and transpiration rate (E) was also found. Days to start flowering ranged from 92 ± 0.33 to 98 ± 0.33. Similarly, days to end flowering varied from 99 ± 0.07 to 107 ± 0.36, days to fruit set 132 ± 0.33 to 139 ± 0.33 and days to fruit maturity 176 ± 0.48 to 184 ± 0.63. Significant variation in fruit length, fruit width and fruit weight was also found. Total soluble solids in fruit pulp varied from 9.0 ± 0.15 to 12.2 ± 0.149°Brix and fruit yield 62.3 ± 1.5 to 86.7 ± 1.33 kg per tree. Noteworthy variation in fruit quality traits was also recorded. This study illustrates that crown architecture has considerable impact on gas exchange parameters, flowering, fruiting, yield and quality of jamun.
Increases in atmospheric CO2 expected over the next century will cause further global warming and further increases in the CO2 concentration in water bodies and, by equilibration of CO2 with HCO3− - CO32− - H+, increased HCO3− and H+ and decreased CO32−. Warming increases stratification and shoaling of the thermocline; this decreases the supply of nutrients regenerated in deep waters to the upper mixed layer across the thermocline, and increases mean photosynthetically active and UV radiation in the upper mixed layer. Taken separately, these changes can have profound changes on the performance of algae and, because of differences among taxa, in the species composition of primary producer populations. However, it is becoming increasingly clear that the effects of individual components of global change cannot be used as useful predictors of what will happen to aquatic ecosystems into the future and that studies need to take more cognisance of the interactive effects between such factors. There is evidence for genetic adaptation, as well as phenotypic acclimation, in algae exposed to either elevated CO2 or increased temperature. Our understanding of the effects on global change requires further studies into the genetic and acclimation responses of algae exposed to combinations of changed environmental factors.
Unicellular phototrophs inhabit ecological niches ranging from extremely cold environments in polar or glacier regions to hot springs. This extremely broad spectrum of temperature tolerance is the consequence of specific adaptation responses acquired during evolution. The molecular mechanisms required to maintain high physiological activity under natural temperature conditions are not completely understood. Temperature adaptation in phototrophs is an important issue in algal biotechnology, as well as in climate prediction, because the algal response to an increased earth surface temperature strongly influences the global carbon budget. In this chapter, the mechanisms of temperature acclimation are summarised to identify potential targets for biotechnology or for improved climate prediction.
The evolution of oxygenic photosynthesis had profound effects on the biogeochemistry of the planet. The increase in atmospheric oxygen levels brought about alterations to a range of biogeochemical processes involving changes in the availability of a host of elements, including nitrogen, sulfur and many metal ions such as iron and manganese, central to biological activities. Critically for photosynthetic organisms, the increase in oxygen levels in the atmosphere following the evolution of oxygenic photosynthesis and the Great Oxidation Event had consequences for the assimilation of inorganic carbon via the enzyme ribulose-1,5-bisphosphate carboxylase oxygenase (Rubisco). Although there are a number of alternative pathways leading to autotrophic CO2 assimilation, 99% of primary productivity on the planet is carried out by processes that involve Rubisco and the Benson–Calvin–Bassham cycle. The accumulation of O2 in the atmosphere also had major repercussions for increasing the energetic yield of the catabolism of photosynthate by allowing oxidative respiration, with a much greater ATP yield than from anaerobic fermentative processes. The interaction of O2 with UVC radiation led to the production of UVC- and UVB-absorbing O3. This also significantly influenced life on Earth and facilitated the colonisation of the upper ocean and terrestrial surface.
The parallel and synergistic developments of atomic resolution structural information, new spectroscopic methods, their underpinning formalism, and the application of sophisticated theoretical methods have led to a step function change in our understanding of photosynthetic light harvesting, the process by which photosynthetic organisms collect solar energy and supply it to their reaction centers to initiate the chemistry of photosynthesis. The new spectroscopic methods, in particular multidimensional spectroscopies, have enabled a transition from recording rates of processes to focusing on mechanism. We discuss two ultrafast spectroscopies – two-dimensional electronic spectroscopy and two-dimensional electronic-vibrational spectroscopy – and illustrate their development through the lens of photosynthetic light harvesting. Both spectroscopies provide enhanced spectral resolution and, in different ways, reveal pathways of energy flow and coherent oscillations which relate to the quantum mechanical mixing of, for example, electronic excitations (excitons) and nuclear motions. The new types of information present in these spectra provoked the application of sophisticated quantum dynamical theories to describe the temporal evolution of the spectra and provide new questions for experimental investigation. While multidimensional spectroscopies have applications in many other areas of science, we feel that the investigation of photosynthetic light harvesting has had the largest influence on the development of spectroscopic and theoretical methods for the study of quantum dynamics in biology, hence the focus of this review. We conclude with key questions for the next decade of this review.
Isoproturon phytotoxicity to wheat (Triticum aestivum L.) is a worry for many farmers in chemical control of weeds in wheat fields, especially in subzero weather conditions. Iron chlorin e6 (ICe6), a new plant growth regulator, has been reported to enhance crop stress resistance to alleviate damage caused by stress; however, it is not clear whether ICe6 has an alleviative effect on isoproturon phytotoxicity to wheat. We determined the alleviative effect of ICe6 on isoproturon phytotoxicity to wheat, and 0.018 g ai ha−1 was the optimal dose. Meanwhile, we also studied the photosynthetic pigment content, photosynthetic parameters, oxidative stress indicators, and antioxidant enzyme activity of wheat treated with the three different treatments. We found that the photosynthetic pigment content, antioxidant enzyme activity, and photosynthesis of wheat damaged by isoproturon were significantly lower than those of the control, and the hydrogen peroxide (H2O2) and malondialdehyde (MDA) content increased. These results indicate that isoproturon stress significantly weakened the photosynthetic and antioxidant capacity of wheat. The photosynthetic pigment content, photosynthetic parameters (excluding intercellular CO2 concentration), and antioxidant enzyme activity of isoproturon+ICe6– treated wheat were significantly higher than those of isoproturon-treated wheat. The H2O2 and MDA content was significantly lower than that of isoproturon-treated wheat. These results indicate that ICe6 treatment maintained the photosynthetic pigment content of wheat and relatively improved photosynthetic capacity, allowing photosynthesis to proceed normally. ICe6 treatment also limits the decrease in antioxidant enzyme activity, effectively clearing excess reactive oxygen species and ultimately alleviating membrane lipid peroxidation damage. In summary, ICe6 not only enhances stress resistance and increases yield in crops such as soybean [Glycine max (L.) Merr.] and canola (Brassica napus L.), but also has an alleviating effect on the isoproturon phytotoxicity to wheat, which is manifested by the improvement of photosynthetic and antioxidant abilities, ultimately leading to an increase in wheat shoot height and shoot fresh weight.
The distribution and abundance of species is limited by the availability of nutrients and energy. Adding limiting nutrients to an ecosystem can increase the abundance of some species and may have far-reaching effects on ecosystem functioning. Conversion of light energy into chemical energy by photosynthesis is the primary method by which energy enters an ecosystem. Three different processes of carbon fixation have evolved: C3, C4, and CAM. Each process has costs and benefits that are environment-dependent, but scientists are still evaluating these. Heterotrophs get energy by consuming autotrophs and other heterotrophs. Herbivores, carnivores, omnivores, detritivores, and decomposers are the major classifications of heterotrophs and combined with autotrophs make up the organisms within a biological community. There are numerous morphological, physiological, and behavioral adaptations associated with each type of feeding. Species distribution is influenced by how the ratio of nutrients available to species affects their physiological and ecological processes. It is also influenced by the presence of predators and adaptations of prey species that reduce their probability of being eaten. Some defenses may be induced by the presence of predators.
Due to increased food demand, the use of herbicides is both necessary and on the rise. Several herbicide classes target photosynthetic electron transport: Herbicide Resistance Action Committee (HRAC) Groups 5, 6, and 22. These herbicides are used in large amounts in many different cropping systems to control several species of broadleaf and grass weeds. This article provides a comprehensive review of what these photosynthesis inhibitors are, how they are used, and their modes of action. Presently, commercial herbicides only inhibit electron flow at two different sites: photosystem II (PSII) and photosystem I (PSI). Herbicides that inhibit electron flow at PSII block the movement of electrons down the electron transport chain, while those that inhibit electron flow at PSI accept electrons. Necrosis developing on the leaves of plants treated with PSII and PSI inhibitors is due to the accumulation of reactive oxygen species. Evolution of resistance, toxicity concerns, and other limitations of these herbicides call for the exploration of new chemistries that can be used to target this pathway.
Photosynthesis takes carbon dioxide from the atmosphere and stores the carbon in the biomass of plants and trees. This carbon is released when the biomass is converted to energy but the overall cycle of growing biomass through photosynthesis and converting it to useful energy can be considered to produce limited net emissions of greenhouse gases. The processes by which biomass is converted into energy are described, including the thermochemical processes of combustion and gasification of solid biomass, the biochemical processes of anaerobic digestion, and alcoholic fermentation and the extraction of oil from plants. Combustion of biomass to generate electricity is described and the gasification of biomass is discussed. Anaerobic digestion to produce biogas and the alcoholic fermentation of crops to produce biofuel are described. The production of biodiesel by the extraction and purification of vegetable oil from plants is also described. The chapter is supported by 5 examples, 16 questions with answers and full solutions in the accompanying online material. Further reading and online resources are identified.
Mature leaves of tree seedlings were exposed to high light in four experimental gaps in the Jamaican upper montane rainforest (UMRF). Two of the six species studied were light-demanders: Alchornea latifolia and Clethra occidentalis. Two were gap-favoured: Pittosporum undulatum (an invasive) and Palicourea alpina (a subcanopy shrub). One was intermediate: Hedyosmum arborescens, and one was shade-tolerant: Guarea glabra. After five months, the following significant changes occurred in shade leaves that were exposed to gaps (‘shade-to-gap’ leaves; values as % of those in the pre-gap shade): maximum rate of photosynthesis + 40% (Alchornea), +35% (Clethra), −34% (Pittosporum), +72% (Palicourea); dark respiration +120% (Alchornea), +140% (Clethra), +60% (Pittosporum), +233% (Palicourea), +175% (Hedyosmum), +100% (Guarea); leaf thickness +18% (Alchornea), +18% (Clethra), +14% (Palicourea); leaf mass per unit area +18% (Alchornea), +15% (Pittosporum). Leaves produced in the gaps were (as a percentage of total live leaf number) 74% (Alchornea), 71% (Clethra), 50% (Pittosporum), 71% (Palicourea), 62% (Hedyosmum) and 50% (Guarea). Photosynthetic rates of leaves produced in the gaps were 53–120% higher than ‘shade-to-gap’ leaves. Overall, shade leaves on the three native, more light-demanding species (Alchornea, Clethra and Palicourea) showed photosynthetic acclimation, while the more shade-tolerant species (Hedyosmum and Guarea and Pittosporum undulatum) showed little acclimation in shade-to-gap leaves.
Meteorological extremes such as heatwaves and water limitations during the ripening season could negatively impact vine ecophysiology and berry metabolism resulting in lower yield per vine. This project aimed to compare two different soil managements during two growing-production seasons (2021 and 2022) with respect to control without any treatment (control). The two managements were: Zeowine (30 t/ha; a soil conditioner made with clinoptilolite and compost proceeding of industrial wine-waste) and compost (20 t/ha). The trial was organized at Col d'Orcia Estate (Montalcino, Tuscan wine region, Italy). The purpose was twofold: (1) to evaluate the effects of Zeowine treatments on leaf gas exchanges, midday stem water potential, chlorophyll fluorescence and leaf temperature (ecophysiology); and (2) to determine any repercussions on the quality of the grapes (technological and phenolics analyses). The parameters plant yield, yeast assimilable nitrogen, fractionation of anthocyanins (cyanidin, delphinidin, malvidin, peonidin and petunidin), caffeic acid, coumaric acid, gallic acid, ferulic acid, kaempferol and quercetin were also analysed. Zeowine showed higher photosynthesis, less negative midday water potential and lower leaf temperature. Essentially, no significant difference was found between the compost and the control. Furthermore, Zeowine grapevines showed higher anthocyanin accumulation and less quercetin content. In general, compost applied together with zeolite could alleviate the adverse effects of water stress and improve plant growth, yield and quality. The control management strategy proved to be the least beneficial for the well-being of the plant and the final quality of the product, confirming the need for amendments in critical years.
This chapter serves as an introduction to the book. It discusses the origin of Planet Earth and its Moon, their dependence on the Sun for energy, and the evolution of life on Earth. The evolution of the first living cell seems to have been a single event and all life on Earth is directly derived from this individual primary organism. The first life forms were anaerobic bacteria, but these later gave rise to photosynthesising cyanobacteria, which produced oxygen. The presence of oxygen eventually led to the emergence of aerobic animals and plants. The chapter then details the emergence of the oceans and supercontinents Pangea and Gondwanaland, the eventual break-up of the supercontinents and the development of the varied ecosystems which characterise Planet Earth at the present time.
Ocean acidification (OA) refers to a global decline in the average pH of seawater driven by the absorption of atmospheric carbon dioxide (CO2). Marine macroalgae, while affected by this pH change, are also able to modify seawater pH through their own interaction with inorganic carbon in the carbonate system. Through this action, macroalgae-dominated habitats are potential refugia from OA for associated marine species. This review summarises the most prominent literature on the role of macroalgae in OA mitigation and the potential of macroalgal habitats to serve as OA refugia. It includes a brief overview of macroalgal distribution in an effort to illustrate where such refugia might be most prevalent. Macroalgae influence seawater carbonate chemistry through the absorption of CO2 and HCO3− during photosynthesis, raising surrounding seawater pH in the process. This transient effect on seawater chemistry could provide some respite from the negative effects of OA for many marine species. This refuge role varies over a range of scales along with macroalgal architecture, which varies in size from low-growing turfs to large canopy-forming stands. The associated pH changes can range over various temporal (daily and seasonal) and spatial (from centimetre to kilometre) scales. Areas of high macroalgal biomass are likely to play an important role as significant OA refugia. Such communities are distributed widely throughout the globe. Large brown macroalgae (Laminariales) dominated communities are common in temperate regions, while members of the Fucales are responsible for substantial macroalgal stands in warmer tropical regions. These marine fields and forests have great potential to serve as localised refuges from OA. While more work needs to be done to clarify the effect of macroalgal communities on seawater pH on a large scale, such refuge areas could become important considerations for the management of marine resources and in protected area selection.
Energy transfers between the biosphere and atmosphere affect climate. These include radiative exchange, seen, for example, in the warmth of sunlight; convection, experienced in the cooling influence of a breeze; evaporation; and conduction of heat in the soil. These fluxes depend on the biophysical and physiological characteristics of plants. In addition, plants remove carbon dioxide from the atmosphere during their growth and emit many chemical species to the atmosphere. Biometeorology is a field of science that studies the interactions between the biosphere and the atmosphere through energy, water, and chemical exchanges. These are regulated by the amount of water in the soil, and so the hydrologic cycle is closely coupled to the energy and chemical cycles. Seasonal changes in leaves, both foliar chemistry and the amount of leaves in the canopy, drive short-term variation in energy, water, and chemical fluxes. The growth of vegetation, accumulation of carbon in plant biomass and soil, and changes in floristic composition cause longer-term changes in biosphere-atmosphere coupling over periods of decades, centuries, and millennia.
Another long-standing convention links forests with rainfall. The plentiful rainfall in the Americas was associated with the thick forests, and deforestation was thought to reduce rain. A similar belief unfolded elsewhere in the world, and conservationists reframed the forest-climate question from one of deforesting the land to make a more temperate climate to one of preserving forests and planting trees to protect the supply of water. In rainfall, conservationists found a way to convey the environmental destruction wrought by deforestation. The scientific basis for forest influences on rain was found in new knowledge of stomata, transpiration, and photosynthesis. Eighteenth- and nineteenth-century naturalists sought further evidence for changes in rainfall in the flow of water in streams and rivers. Interception of rainwater by the leaves in forest canopies, infiltration into the soil, runoff over the ground, and evaporation from the soil were identified as key determinants of streamflow. A backlash arose, however, as the nineteenth century lengthened and the advocacy of forests galvanized into a worldwide campaign for forest conservation and tree planting to enhance rainfall.
Plants are the Earth’s primary producers of oxygen, organic compounds, and easily convertible energy. The appearance of photosynthesis in chloroplast-bearing cyanobacteria set the stage for all later life, and is responsible for the oxygenation of the planet. This event is easily apparent in the geological record in the form of rust layers. Dense layers of water-borne organisms, each layer in a symbiotic relationship with the others, such as those seen at stagnant hot springs, likely represent the ancestral condition for later complex, multicellular organisms. This time period, between 1 and 2 billion years ago, is when Eukaryotes evolved, and the division of labor among the cells of Eukaryotes has allowed natural selection to work on different parts of a complex organism, allowing the adaptive diversity we see today in plants and animals. Critically, this time is when energy from the sun is first stored on earth in large amounts. In fact, these large sheets of cyanobacteria and algae have become stored in the geological record and, later, became the source of petroleum. So the fossil fuels of today represent hundreds of millions of years of stored photosynthetic energy, the source of which ultimately was the sun
Microphytobenthos (MPB) communities are responsible for most primary production in shallow intertidal mudflats. The effects of short-term changes in temperature and light (1200, 500 and 0 μmol photons m−2 s−1) on the photosynthetic activity of intertidal MPB communities of Browns River, Tasmania, during winter (0, 5, 10 and 15°C) and summer (20, 25, 30, 35 and 40°C) were examined using a Pulse Amplitude Modulated (Water PAM) fluorometer. The MPB communities were primarily dominated by the diatom genera Navicula, Cocconeis and Amphora, with a difference in species dominance during seasons. During summer, Amphora coffeaeformis dominated communities were significantly impacted by temperatures above 30°C regardless of light intensities. The MPB was able to photosynthesize at temperatures only up to 25°C. The rETRmax at 25°C, ranged from 39.18 ± 3.42 (500 μmol photons m−2 s−1) to 22.83 ± 1.05 (0 μmol photons m−2 s−1), which was lower than the values recorded at an equivalent irradiance in in-situ summer. However, if ambient temperature exceeds 25°C in summer, it is likely that the photosynthetic capabilities of the MPB will be diminished and it will cause irreversible photoinhibition.
Photosynthetic organisms have evolved a great variety of mechanisms to optimize their use of sunlight. Some of the clearest examples of adaptations can be seen by comparing photosynthesis in different species and in different individuals of the same species that grow under high and low light levels. While the adaptations of sun and shade higher plants have been relatively well studied, much less information is available on the photobionts of lichenized Ascomycetes. An important adaptation that can protect photosynthetic organisms from the potentially harmful effects of excess light is non-photochemical quenching (NPQ); NPQ can dissipate unused light energy as heat. Here we used chlorophyll fluorescence to compare the induction and relaxation of NPQ and the induction of electron transport (rETR) in collections of the same lichen species from exposed and from more shaded locations. All species have trebouxioid photobionts and normally grow in more exposed microhabitats but can also be readily collected from more shaded locations. Shade forms display generally higher NPQ, presumably to protect lichens from occasional rapid increases in light that occur during sunflecks. Furthermore, the NPQ of shade forms relaxes quickly when light levels are reduced, presumably to ensure efficient photosynthesis after a sunfleck has passed. The maximal relative electron transport rate is lower in shade than sun collections, probably reflecting a downregulation of photosynthetic capacity to reduce energy costs. We also compared collections of pale and melanized thalli from three species of shade lichens with Symbiochloris as their photobiont. Interestingly, NPQ in melanized thalli from slightly more exposed microhabitats induced and relaxed in a way that resembled shade rather than sun forms of the trebouxioid lichens. This might suggest that in some locations melanization induced during a temporary period of high light may be excessive and could potentially reduce photosynthesis later in the growing season. Taken together, the results suggest that lichen photobionts can flexibly adjust the amount and type of NPQ, and their levels of rETR in response to light availability.
To study the impact of plant density on Chenopodium quinoa (c.v. CICA-17) achene yield and its relationship with morphology, leaf anatomy and gas exchange in the absence of water stress, field trials were conducted at 1995 m asl in Northwestern Argentina. Two plant densities were evaluated; low density (LD) 7.2 plants/m (120 240 pl/ha) and high density (HD) 27.9 plants/m (465 930 pl/ha). HD treatment caused light competition, inducing morphological and anatomical changes in Quinoa plants. Plants grown under HD conditions showed decreases in plant height and stem diameter, lower stomatal dimensions and densities, and thinner leaf blades. Compensation strategies such as increases in specific leaf area and a higher number chloroplasts per palisade cell were observed, nevertheless these changes did not fully compensate C absorption and gas exchange limitations, therefore limiting the uptake of N and P and resulting in a 53.2% lower yield of HD compared to LD. Considering the ability of quinoa plants to change its morphology and anatomy, further studies with intermediate plant densities are necessary in order to determine if it is possible to achieve higher yields and to increase the efficiency in the use of the resources.