Crop germplasm conserved in genebanks, are a fundamental resource of genetic diversity for crop improvement activities, underpinning future food security and sustainable agricultural practices. However, taxonomic errors in genebank germplasm (due to misclassification, contamination and poor data collation) restrict the effective use of this material for correct purpose. Earlier studies investigating species genetic diversity using genebank germplasm, have shown varying levels of taxonomic error within the Brassica species. In response to this reported taxonomic error of global collections, together with the availability of a multiplex PCR (MPCR) marker, targeting the specific chromosomes (A, B and C) of the six Brassica species in U's triangle, this study was undertaken to confirm the taxonomic identity of accessions within the Australian Grains Genebank's (AGG) long-term Brassica collection. A total of 5161 accessions were analysed with MPCR for taxonomic identification, of which, 4842 (93.8%) were confirmed to be consistent (correct) with their labelled taxonomy, while the remaining 319 (6.2%) were identified as taxonomically inconsistent (in-error). Through the evaluation of earlier regeneration and original seed of the error accessions with MPCR, we determined that 80.9% of the taxonomic errors were traced back to the original seed, while 19.1% of errors were the result of genebank seed regeneration handling practices. Results from this study directly enhance information of the AGG Brassica collection and shape directions for distribution, acquisition and regeneration practices within the AGG and potentially other global genebanks, which will facilitate in a more effective use of these valuable genetic resources by researchers and breeders.

Endosperm tissue that nourishes the embryo during seed development, upon maturity, nourishes the global population with special reference to cereal crops like maize, wheat and rice. In about 70% of the angiosperms, endosperm genome content is ‘3n’ with 2:1 (maternal:paternal) contribution, as a result of the second fertilization event. However, angiosperms evolution also documents diversity in endosperm genome content from ‘2n’ to ‘15n’, in scale with the corresponding maternal genome dosage variability (‘1n’ to ‘14n’), whereas paternal contribution is invariable. In apomicts, due to lack of fertilization, or pseudogamy (fertilization of the central cell for endosperm formation), endosperm genome dosage (m:p) has been reported to range between 1:1 and 8:3. Exceptionally, the central cell with one unreduced nucleus and fused with a reduced sperm cell, with 2:1 normal genome dosage, has been reported in Panicum. Altered genome dosage levels are reportedly correlative with eccentricities among maternal and paternal contribution to seed resource allocation. Besides endosperm ploidy variability between species of angiosperms, the present review gives an overview of the ploidy variability in endosperm cells within a seed, up to ‘690n’. In addition to genome-scale variability in the endosperm, some taxa of angiosperms exhibit chlorophyllous endosperms and some chlorophyllous embryos. Also, endosperm cell number during seed development is reported to have a strong association with grain weight at maturity. Genes underlying these traits of variability are unknown, and the present review underscores the variability and highlights the potential of the single-cell sequencing techniques towards understanding the genetic mechanisms associated with these variable traits.

Genebanks play an important role in the conservation of global plant biodiversity. The European Search Catalogue for Plant Genetic Resources (EURISCO) was created as a central entry point to provide information on these collections. However, a major challenge lies in the heterogeneity of scientific plant names. This makes the selection of suitable plant material, e.g. for research or breeding purposes, significantly more difficult. For this reason, the taxonomic backbone of EURISCO has been completely revised. Search terms entered by users are now automatically checked against taxonomic reference repositories, allowing a variety of synonyms to be identified. In addition, a fuzzy search has been implemented, which makes the search function tolerant of erroneous data (e.g. caused by typing errors). Besides improvements of the search interface, more support will be given to EURISCO's data providers. The new developments provide a tool that makes it easier to identify problem cases within the data, such as accepted/non-accepted taxonomic names, and will successively improve the quality of taxonomic information in EURISCO.

The rising need for crop diversification to mitigate the impacts of climate change on food security urges the exploration of crop wild relatives (CWR) as potential genetic resources for crop improvement. This study aimed at assessing the diversity of CWR of the Indian Ocean islands of Mauritius and Rodrigues and proposing cost-effective conservation measures for their sustainable use. A comprehensive list of the native species was collated from The Mauritius Herbarium and published literature. Each species was assessed for the economic value of its related crop, utilization potential for crop improvement, relative distribution, occurrence status and Red List conservation status, using a standard scoring method for prioritization. The occurrence data of the priority species were collected, verified, geo-referenced and mapped. A total of 43 crop-related species were identified for both islands and 21 species were prioritized for active conservation. The CWR diversity hotspots in Mauritius included Mondrain, followed by Florin and Le Pouce Mountain. Although a wide diversity of CWR has been recorded on both islands, most do not relate to major economic crops in use, therefore only a few species may be gene donors to economic crops at the regional and global level. For example, coffee, a major global beverage crop, has three wild relatives on Mauritius, which could potentially be of interest for future predictive characterization.

Cereal crops are one of the most widely consumed and most valuable crops for humankind. The species have been domesticated for over 10,000 years and as such have lost much of the genetic diversity that is present within their wild relatives. Future breeding efforts will require the use of genetic diversity from crop wild relatives (CWRs) to help improve our cereal crops. This study aims to identify an in situ conservation network within the Mediterranean Basin and west Asia for the four cereal crops, barley (Hordeum L.), oat (Avena L.), rye (Secale L.) and wheat (Aegilops L., Amblyopyrum L., Triticum L.). This region is a centre of diversity for these taxa and an area of potentially high genetic diversity, which if left unprotected will not be available for plant breeders to utilize in the future. Presence point data for a total of 90 taxa were collected from GBIF and resulted in 76,343 individual presence points across the 44 countries in the study region. Geographic Information System (GIS) software was used to identify potential in situ reserve networks per crop genepool and for all crops combined. Results indicate a network of 10 locations across the region which would protect over 80% of the taxa. The number one priority reserve is found within the Fertile Crescent region on the border of Israel, Syria and Jordan. This proposed reserve location contains 93 currently protected areas (i.e. National Parks) and as such, it may only be necessary to alter management plans to effectively protect CWR populations. For taxa not found within protected areas ex situ conservation may be more appropriate and should be implemented as a backup to the in situ reserve network.

Crop wild relatives (CWR) are wild plant taxa relatively closely related to crops that can contribute beneficial traits for crop improvement, such as biotic and abiotic stress resistance. Turkey has a rich flora of approximately 11,000 higher plant taxa, has two Vavilov centres of crop diversity (i.e. the Mediterranean and the Near East), is recognized as the cradle of agriculture providing the northern boundary of the Fertile Crescent, and has recently been identified as the country with the highest concentration of CWR diversity. The objective of this paper is to present the results of a gap analysis of CWR genetic diversity in Turkey using existing data sources of 458 of the 764 priority CWR taxa with available georeferenced data. In total, 27,597 presence points were obtained from the Global Biodiversity Information Facility, Aegean Agricultural Research Institute in Menemen and Field Crops Central Research Institute, Ankara. Geographic Information System (GIS) software was used to identify taxon richness, sampling bias, future ex situ population collection and location where existing protected sites could form the basis of national network of in situ genetic reserves. CWR taxon richness was located along the Aegean Coast, Syrian border and southern Mediterranean coast. Current ex situ representation of CWR taxa is inadequate and further collection across the entire country is required. The highest priority in situ reserve location is found in Izmir, Sanliurfa and Antalya province, which reflects overall CWR richness.

Exotic crops—plant species grown in relatively small quantities and not traditionally cultivated in a country or region—are often intimately linked with the ethnic origins of their maintainers and are a principal source of culinary and nutritional diversity for many people. Recognizing that a wealth of exotic crop diversity and associated knowledge is held by small-scale growers in the UK, Garden Organic initiated the Sowing New Seeds project to capture and preserve some of this valuable resource by building a seed collection and knowledge base. To establish a sample of this diversity and knowledge, we undertook a survey at 31 allotment sites in the Midlands region of the UK with the objectives of identifying the exotic crops cultivated, characterizing the demography of those who grow them, understanding their direct use values, and assessing their potential indirect use value for the diversification and improvement of other crops. Results reveal that 26% of the food crops recorded are exotic and that they are grown by people belonging to 13 different ethnic groups. The majority save their own seed, indicating that these crops are performing well in the UK, with grower selection providing the basis for their continuing success. Further, most maintainers swap seed with other growers, indicating that exotic crops are likely to be gradually diversifying in response to different growing conditions—a positive sign for their value for local food security and as national genetic resources with potential for use in crop improvement programs. The research highlights the multitude of benefits that growers obtain through cultivating exotic crops, which are not only related to nutrition and culinary requirements, but also to general health and well-being, culture, and a range of other forms of life enrichment. It is critical that growers are encouraged and supported in continuing to cultivate, save and pass on their exotic crops to younger generations, as well as to protect allotments from development in order to maintain this important diversity adapted to local growing conditions. Importantly, many exotic crops currently grown on a small scale may enter into commerce, and thus expand the diversity of the UK's food crop base. Such a shift may be particularly important in the face of the increasingly detrimental impacts of climate change on crop production. We conclude that exotic crop diversity could be more important for future nutrition, health and food security than we currently appreciate.

Safflower is a multi-purpose oilseed crop, primarily known for good quality oil containing highest polyunsaturated fatty acid content (>80%) among edible oils. In this study, a core subset of 148 safflower accessions representing 15 countries, predominantly of Indian origin, was evaluated for agronomic traits and characterized for genetic diversity, population structure and linkage disequilibrium (LD) using 44 simple sequence repeat (SSR) loci across 11 linkage groups to enable its utilization in breeding and genetic mapping purposes. The collection had substantial variation for seed yield-related traits. SSR allelic variation was low as indicated by average number of alleles (3.6) per locus, gene diversity (0.314) and polymorphism information content (0.284). Cluster analysis (neighbour-joining tree) revealed five major genotypic groups with very low bootstrap support. STRUCTURE analysis showed recognizable population structure; based on membership coefficients ( ≥ 0.75), 52% accessions were classified into four populations (K= 4) and the remaining 48% accessions into admixture group. High Fst values (0.30–0.48) suggested that the populations were substantially differentiated. Analysis of molecular variance results showed that maximum of genetic variation (85%) was explained between individuals within the population suggesting that the population structure was only weak. About 1.9% of SSR locus pairs were in LD, which appeared to be low. High phenotypic variation, mild population structure and low level of LD among unlinked loci suggested that the core subset can be explored for association mapping of seed yield components in safflower.

The literature in recent times lacks adequate report on the utilization and genetic improvement programmes on Dioscorea dumetorum. Despite the wide application of this yam species in agriculture and medicine, it suffers neglect while other species are becoming increasingly popular. Therefore, it is pertinent to focus on research that will bring this species to the limelight. The aim of the present study was to evaluate the ploidy levels, morphological traits and secondary metabolite profile of 53 accessions of D. dumetorum from six countries in West and Central Africa. Ploidy levels were determined using flow cytometry. Overall, 18 morphological traits were recorded from the above- and underground parts of the plant. The 53 accessions were subjected to statistical analyses using the data on ploidy levels, morphological traits and qualitative phytochemical screening. A total of 15 accessions from the generated clusters were selected for thin layer chromatographic and quantitative phytochemical analyses. The analyses revealed diploid (2x) and triploid (3x) levels in these accessions. The pruned dendrogram derived from agglomerative hierarchical clustering based on the distance matrix revealed three main groups, showing a relationship between sex and ploidy level in the accessions and exhibiting sufficient cluster variability that may be important in designing breeding programmes. The crop was also shown to possess metabolites such as alkaloids, saponins and flavonoids, which are known to be useful in the application of phytomedicine. Genetic variability observed among the yam accessions in this study can be used for breeding purposes and to broaden the genetic basis of the crop for efficient utilization of the genetic potential possessed by this species.

Niche modelling software can be used to assess the probability of detecting a population of a plant species at a certain location. In this study, we used the distribution of the wild relatives of lettuce (Lactuca spp.) to investigate the applicability of Maxent species distribution models for collecting missions. Geographic origin data of genebank and herbarium specimens and climatic data of the origin locations were used as input. For Lactuca saligna, we varied the input data by omitting the specimens from different parts of the known distribution area to assess the robustness of the predicted distributions. Furthermore, we examined the accuracy of the modelling by comparing the predicted probabilities of population presence against recent expedition data for the endemic Lactuca georgica and the cosmopolitan Lactuca serriola. We found Maxent to be quite robust in its predictions, although its usefulness was higher for endemic taxa than for more widespread species. The exclusion of occurrence data from the perceived range margins of the species can result in important information about local adaptation to distinct climatic conditions. We discuss the potential for enhanced use of Maxent in germplasm collecting planning.

Plant genetic resources are raw materials and their use in breeding is one of the most sustainable ways to conserve biodiversity. The ICRISAT has over 120,000 accessions of its five mandate crops and six small millets. The management and utilization of such large diversity are greatest challenges to germplasm curators and crop breeders. New sources of variations have been discovered using core and minicore collections developed at the ICRISAT. About 1.4 million seed samples have been distributed; some accessions with specific attributes have been requested more frequently. The advances in genomics have led researchers to dissect population structure and diversity and mine allelic variations associated with agronomically beneficial traits. Genome-wide association mapping in sorghum has revealed significant marker–trait associations for many agronomically beneficial traits. Wild relatives harbour genes for resistance to diseases and insect pests. Resistance to pod borer in chickpea and pigeonpea and resistance to rust and late leaf spot in groundnut have been successfully introgressed into a cultivated genetic background. Synthetics in groundnut are available to broaden the cultigen's gene pool. ICRISAT has notified the release of 266 varieties/cultivars, germplasm, and elite genetic stocks with unique traits, with some having a significant impact on breeding programs. Seventy-five germplasm lines have been directly released for cultivation in 39 countries.

In this study, the genetic variability among 130 accessions of the Portuguese germplasm collection of Cucurbita pepo L. maintained at the Banco Português de Germoplasma Vegetal was assessed using AFLP (amplified fragment length polymorphism) and RAPD (random amplified polymorphic DNA) techniques for the identification of a genetically diverse core group of accessions for field phenotypic analysis. The surprisingly completely different molecular patterns exhibited by multiple accessions was later confirmed in the distribution of the putative C. pepo plants into two clusters drastically separated at a very low level of genetic similarity (DICE coefficient = 0.37). Additional analyses with RAPD and ISSR (inter single sequence repeat) markers and the introduction of standard genotypes of C. maxima L. and C. moschata L. into the analyses allowed the identification of multiple accessions of the last species wrongly included in the C. pepo collection. This study is a good example of the usefulness of DNA markers in the establishment and management of plant germplasm collections.

For maintaining food security and livelihood, farmers in marginal areas of production environments make use of high levels of crop genetic diversity. The exchange of seed and varieties among villagers, and also the relative isolation of local varieties in their production environments, contributes to the continued existence of locally adapted genotypes. In Tigray, one of the major barley-growing regions of Ethiopia, local varieties and local seed systems are dominant. The annual barley seed requirement is met with seed produced, saved and exchanged by farmers. In order to understand the flows of seed and varieties within and between villages, a study was conducted using a survey to gather information from 130 respondents in seven villages. Seed network analysis was used as an analytical tool to assess flows of seed and varieties and to identify farmers who play different roles in the seed system. Within the major seed exchange network, nodal or connector farmers linked seed subnetworks. The flow within villages was much more dominant than beyond. Rare varieties appeared to be sourced from farms that maintain a broad variety portfolio. Varieties seemed to disseminate informally across farms, in their target environments, following participatory varietal selection. The methodology of social seed network analysis proved to be a powerful tool for monitoring seed and variety flows. Furthermore, it identified farmers as critical partners in the conservation and on-farm management of plant genetic resources, recognized the role of plant breeders in participatory varietal selection and that of seed experts, engaged in strengthening local seed supply and in disseminating quality seed of superior varieties.

Introduction. Les aires protégées représentent un immense réservoir de ressources biologiques dont dépendent fortement les populations riveraines. La non-prise en compte des savoirs locaux constitue souvent un frein aux politiques de conservation et d’utilisation durable de la biodiversité dans ces aires. La réserve de Pama, située en zone soudanienne au sud-est du Burkina Faso, est un bon exemple de la divergence existant entre les besoins d’autosubsistance des populations riveraines et la nécessité de conserver la biodiversité. L’évaluation de l’importance socio-économique de cette réserve pour les populations riveraines pourrait permettre de mieux adapter la stratégie de gestion des ressources naturelles. Matériel et méthodes. Des enquêtes ethnobotaniques ont été menées en se basant sur des interviews individuelles. Les informations obtenues à partir de l’interrogation de 30 personnes ressources ont permis (1) de recenser les différentes utilisations faites de la réserve par les populations locales ainsi que l’impact de ces utilisations sur la flore et (2) d’évaluer la perception des villageois sur la façon de gérer les ressources de leur forêt. Résultats. Un total de 58 espèces végétales de la réserve, soit plus de 15 % de la flore locale, fournissent diverses ressources aux populations riveraines, dont du matériel de construction (90 % de réponses), des plantes médicinales (73,33 %), des plantes alimentaires (73,33 %), etc. Les espèces végétales les plus sollicitées se sont révélées être entre autres Vitellaria paradoxa (80 %), Parkia biglobosa (66,67 %), Diospyros mespiliformis (33,33 %), Gardenia erubescens (33,33 %), Lannea microcarpa (33,33 %), Tamarindus indica (33,33 %), Andropogon gayanus (26,67 %) et A. chinensis (26,67 %) Certaines de ces espèces se sont révélées de plus en plus rares du fait de la dégradation des conditions climatiques, de l’exploitation abusive de bois vert et de l’appauvrissement des sols. Conclusion. L’étude que nous avons menée sur la réserve de Pama nous conduit à préconiser un renforcement des mesures de protection de l’environnement par l’implication des populations riveraines. Par ailleurs, la plantation en champ d’espèces utiles en voie de raréfaction serait une action apte à limiter la pression d’exploitation sur la réserve

Plant genetic resources (PGR) include cultivars, landraces, wild species closely related to cultivated varieties, breeder's elite lines and mutants. The loss of genetic diversity caused by the practice of agriculture and the availability of genetic information has resulted in a great effort dedicated to the collection of PGR. Prior to the advent of molecular profiling, accessions in germplasm collections were examined based on morphology. The development of molecular techniques now allows a more accurate analysis of large collections. Next-generation sequencing (NGS) with de novo assembly and resequencing has already provided a substantial amount of information, which warrants the coordination of existing databases and their integration into genebanks. Thus, the integration and coordination of genomic data into genebanks is very important and requires an international effort. From the determination of phenotypic traits to the application of NGS to whole genomes, every aspect of genomics will have a great impact not only on PGR conservation, but also on plant breeding programmes.

Genetic variation in Lactuca serriola, the closest wild relative of cultivated lettuce, was studied across Europe from the Czech Republic to the United Kingdom, using three molecular marker systems, simple sequence repeat (SSR, microsatellites), AFLP and nucleotide-binding site (NBS) profiling. The ‘functional’ marker system NBS profiling, targeting disease resistance genes of the NBS/LRR family, did not show marked differences in genetic diversity parameters to the other systems. The autogamy of the species resulted in low observed heterozygosity and high population differentiation. Intra-population variation ranged from complete homogeneity to nearly complete heterogeneity. The highest genetic diversity was found in central Europe. The SSR results were compared to SSR variation screened earlier in the lettuce collection of the Centre for Genetic Resources, the Netherlands (CGN). In the UK, practically only a single SSR genotype was found. This genotype together with a few other common SSR genotypes comprised a large part of the plants sampled on the continent. Among the ten most frequent SSR genotypes observed, eight were already present in the CGN collection. Overall, the CGN collection appears to already have a fair representation of genetic variation from NW Europe. The results are discussed in relation to sampling strategies for improving genebank collections of crop wild relatives.

Historic collections of biological material are important genetic resources for taxonomic, evolutionary and historical research. In this paper we describe a seed collection dating from 1862 to 1918 maintained at the Swedish Museum of Cultural History. The collection contains over 3000 well-documented seed samples of various agricultural crops, mostly cereals. A subset of 100 samples divided over ten species frequently represented in the collection and a range of ages were tested for germinability and DNA preservation. None of these accessions were found to contain viable seeds. DNA extracted from the seeds was degraded, but the amount of degradation varied between species. DNA quality was evaluated by yield, fragment size and size of amplification product. Quality was highest for DNA extracted from Pisum sativum and Vicia sativa. DNA extracted from Brassica napus, Beta vulgaris and Trifolium pratense was more fragmented, and DNA extracted from Triticum aestivum, Secale sereale, Hordeum vulgare, Avena sativa and Phleum pratense was most degraded. Polymerase chain reaction (PCR) amplification of ribosomal DNA fragments of up to 700 bp was permitted for most samples in all species. To test whether single-copy nuclear genes could be amplified from the extracted DNA, microsatellite markers were used on the Pisum sativum and Hordeum vulgare samples. Polymorphisms of microsatellite markers were detected between samples for both species. The results show that the 19th-century seed collection can be utilized to infer genetic relationships among obsolete cultivars as well as for other types of genetic research based on sequence or marker analysis.

The treatment of traditional knowledge (TK) and plant genetic resources is timely international topics for debate with the focus on preventing the misappropriation and misuse of these resources, and on promoting the equitable sharing of benefits that arise from utilization and commercialization. In this paper, the initiatives of the Association of Southeast Asian Nations (ASEAN) and its member countries toward safeguarding TK associated with plant genetic resources are reviewed. While Malaysia, Thailand and the Philippines have national frameworks in place for the protection of TK and plant genetic resources, other ASEAN member countries do not. In addition, true regional cooperation among ASEAN countries in the area of TK and plant genetic resources has yet to be realized. After a review of these cases, this paper will argue that a single unique model or solution for all ASEAN member countries cannot meet the wide range of concerns and objectives that exist to protect TK and plant genetic resources. Instead, what is suggested is to create a mix of solutions to better handle TK and plant genetic resources issues.

Germplasm accessions of wild Lactuca species are maintained worldwide in ex situ collections as gene reservoirs for quality and disease resistance traits for cultivated lettuce. Accessions of 12 Lactuca species from 6 genebanks were compared via morphological characterization and AFLP (Amplified Fragment Length Polymorphism)-based profiling to estimate the extent of duplication. A method of assessing redundancy within very similar, but not identical accessions, is proposed, based on 352 polymorphic AFLP products. Seven duplication groups showed a high level of AFLP similarity, and one pair of Lactuca saligna accessions displayed identical AFLP profiles. In several cases, the morphological assessment indicated that a taxonomic reclassification of accessions was necessary. Candidate duplicates were identified using population parameters and inter- and intra-accession variability. The implications of these findings on the conservation of wild species are discussed.

Farmers in local communities have a considerable amount of information on their genetic resources both at the individual and community level. The farmers' knowledge is interweaved into their daily practices as a reserve accumulated over the generations. The Farmer Field Fora approach (FFF) has been conceptualized in order to activate farmers to identify the existing resources both in the crops they cultivate and in their knowledge, to recognize its value and to start using it more consciously. The FFF approach links the use of existing diversity to the possibility of having new varieties and to improving productivity. In weekly meetings farmers observe changes in the field between varieties, debate on them and draw conclusions. In every session a theme on plant development is debated among farmers with the aid of a facilitator. Close contact with researchers allows involvement with the breeding practices and enables the aims and conduct used in research to be understood. This empowers farmers to participate in a more active way in research, to apply more precise ways of observing and managing their genetic resources, and to link their work to conservation activities at the national and local level. The results of the FFF trial, which was carried out in 10 villages in the region of San in Mali in 2001, show an increased interest among farmers to observe varieties. The appreciation criteria used is multiple including yield, earliness, strong tillers, high number of tillers, and resistance for diseases and Striga. It seems obvious that even though the goal of the approach is on-farm conservation of plant genetic resources, it must be closely linked to farmers' interest. The variation of the results between villages demonstrates variability of climatic condition in this region and a high genotype—environment interaction. Further modifications of the approach are required in order to improve equitable participation of different stakeholders and improve the institutionalization of on-farm conservation.