Wilson loop diagrams are an important tool in studying scattering amplitudes of SYM $N=4$ theory and are known by previous work to be associated to positroids. In this paper, we study the structure of the associated positroids, as well as the structure of the denominator of the integrand defined by each diagram. We give an algorithm to derive the Grassmann necklace of the associated positroid directly from the Wilson loop diagram, and a recursive proof that the dimension of these cells is thrice the number of propagators in the diagram. We also show that the ideal generated by the denominator in the integrand is the radical of the ideal generated by the product of Grassmann necklace minors.

Wilson loop diagrams are an important tool in studying scattering amplitudes of SYM $N=4$ theory and are known by previous work to be associated to positroids. We characterize the conditions under which two Wilson loop diagrams give the same positroid, prove that an important subclass of subdiagrams (exact subdiagrams) corresponds to uniform matroids, and enumerate the number of different Wilson loop diagrams that correspond to each positroid cell. We also give a correspondence between those positroids which can arise from Wilson loop diagrams and directions in associahedra.