Genetic diversity of Mithun population in Bhutan was studied using 14 microsatellite markers. Two sets of two-step polymerase chain reactions were performed with multiplex and individual markers for genotyping 105 hair samples collected from Arong in Samdrupjongkhar (AS, 36) and Wangdigang in Zhemgang (WZ, 69). Fifty-three alleles were detected with average of 3.89 alleles and polymorphism information content of 0.44 ± 0.03 per locus. A low level of genetic variability within population was present with observed heterozygosity at 0.50 ± 0.06 and expected heterozygosity at 0.48 ± 0.06. Analysis of molecular variance attributed 58 percent of total variation to within the individuals. Mean F IS and F IT were −0.056 and 0.005 respectively, indicated low level of population differentiation and limited out-breeding. The normal L-shaped distribution of allelic frequencies without any mode-shift revealed the absence of recent genetic bottleneck in Mithun populations. Therefore to manage inbreeding in the small Mithun population of Bhutan, periodic assessment of inbreeding levels and exchange of animals between farms is recommended to reduce frequency of introduction of animals from India.

Pedigree analysis using genealogical information of 18 315 animals born between 1949 and 2008 was done to quantify genetic variability of the Sahiwal population in Kenya. Generation intervals for sire pathways were longer than dam pathways and increased over year periods, from about 4–16 years. The later was due to use of old bulls for breeding in the last 2 year groups and cessation of progeny testing in the year 2000. Average inbreeding level in last year period studied was 1.2 percent. Genetic variability of the population as assessed based on gene origin statistics decreased over the years. The ratio of effective number of founders to founders of 0.06 showed unequal contribution of founders to the reference population. However, since the founding population, ancestors contributed equally as shown by the ratio of f e/f a of 0.94, which could also be due to lack of effective selection in this population. The ratio of f g/f a of 0.63 indicated genetic loss of genetic variability occurred through genetic drift in the Kenyan Sahiwal population. The small number of ancestors (16) that accounted for 50 percent of the total variation in the reference population suggested overuse of a small number of some animals as parents over generations. The smaller ratio of f g/f e compared with f a/f e also confirms loss of genetic variability in the population by genetic drift than bottlenecks. Therefore the breeding strategy for the Sahiwal population in Kenya should incorporate tools that balance rate of genetic gain and the future rate of inbreeding.

An exploratory survey to phenotypically characterize indigenous chicken populations was carried out in Metekel zone of Northwestern Ethiopia in April 2013. A total of 69 males and 244 females were sampled to record their qualitative and quantitative traits. Eight quantitative and 16 qualitative variables were measured. Sampling included three districts representing different agroecological zones. Coefficient of variation for quantitative variables ranged from 6.38 to 52.37 percent in male sample populations and 4.59–21.4 percent in females. The chi-square tests for plumage colour of the neck, ear lobe colour and skeletal variant type were highly significant (χ 2 < 0.05). The correct classification percentage from discriminant analysis was 93.73 and 98.41 percent for male and female sample populations, respectively, indicating the homogeneity of the chicken populations within districts. The stepwise discriminant analysis identified five variables for male and three variables for female sample populations, which had the highest discriminating power. Canonical analyses showed that differences in body measurements between indigenous chicken populations were highly significant (P <0.0001). The results obtained from on-farm performance evaluation indicated that the average age at first lay of hens, number of chicks weaned and mean number of eggs laid per bird per year were 5.5 months, 6.5, 50.1, respectively. This information will constitute the basis for further characterization and development of conservation strategies for indigenous chicken populations of Northwestern Ethiopia.

A survey to document the behaviour characteristics and mortality pattern of indigenous chicken of Kerala and a field egg recording study to record egg production characteristics of these birds were conducted. Flight distance and height was 13.29 and 3.97 m, respectively. The territory radius of cocks was 121.15 m. The chick survivability at 4 weeks of age was 64.98 percent. The day-old and 8th week body weights were 28.83 and 347.24 g, respectively. The 20th and 40th week body weight of males were 1,428.42 and 1,936.67 g and that of females were 1,114.04 and 1,445.63 g, respectively. The mortality up to 72 weeks was 69.38 percent and major cause of mortality during chick, grower and layer stage were mongoose (44.63 percent), wolf (24.29 percent) and diseases (52.18 percent) respectively. The fertility was 71.22 percent and hatchability on total and fertile egg set were 62.26 and 87.42 percent, respectively. There were 2.13 clutches in a laying cycle with inter-clutch intervals of 1.11 days. The average clutch size and number of eggs per cycle were 7.27 and 14.32, respectively. The egg number up to 72 weeks on hen-day and hen-housed basis was 116.81 and 85.84, respectively and the eggs were laid in 7.7 cycles. The age at first egg and average age at sexual maturity were 155 and 199.26 days, respectively. The egg weight at 28, 40 and 72 weeks of age was 37.80, 40.74 and 43.31 g, respectively, and egg mass per bird was 4,659.04 g. The broodiness and incubation pause were 26.03 and 121.75 days, respectively.

The study was aimed to identify, characterize and describe the phenotypic variation of indigenous goose populations in Bangladesh. The research was conducted at Sylhet Sadar Upazilla in Sylhet district and encompassed about 141 geese (74 brown type and 67 white type). Least Square Mean ± SE of body length, wing span, shank length, beak length and head length of mature indigenous goose were 73.47 ± 0.95, 134.53 ± 1.38, 9.27 ± 0.09, 8.88 ± 0.10 and 6.42 ± 0.02 cm, respectively. Males were significantly (p < 0.01) higher than their female counterparts for all morphometric traits but no significant differences (p > 0.05) were found between two types. The body weight of indigenous goose at day old, 2-week, 1-month, 2-month and 10-month of age were 95.45 ± 0.88, 148.59 ± 1.55, 407.34 ± 7.27 gm, 1.19 ± 0.03 kg and 3.65 ± 0.06 kg, respectively. Males were significantly (p < 0.01) heavier than females in all age groups except day old gosling but no significant difference (p > 0.05) were observed for body weights between two types of goose. Egg weight, egg length, egg width, incubation period, clutch size, number of eggs in a breeding season and age at first egg were 131.85 ± 1.70 gm, 7.40 ± 0.02 cm, 5.22 ± 0.02 cm, 30.30 ± 0.07 days, 7.42 ± 0.08, 20.52 ± 0.38 and 313.22 ± 3.03 days, respectively. The number of eggs in a breeding season of brown type were significantly (p < 0.05) higher than that of white type goose. This study provides a bench mark for the morphometric traits and performance of goose in Bangladesh.

Goats make up the largest group of ruminant livestock in Nigeria and are strategic in bridging animal protein supply gap and improving the economy of rural households. The hypervariable region 1 (HVR1) of the caprine mitochondrial genome was investigated to better understand genetic diversity important for improving selection for animal breeding and conservation programs. We sequenced and analysed the mitochondrial DNA (mtDNA) HVR1 in 291 unrelated indigenous Nigerian goats (West African Dwarf (WAD), Red Sokoto (RSO) and Sahel (SAH)), randomly sampled from around the country, and compared them with the HVR1 sequences of 336 Indian goats and 12 other sequences in five different species in the genus Capra (C. falconeri, C. ibex nubiana, C. aegagrus, C. cylindricornis and C. sibirica). A total of 139 polymorphic sites from 291 individuals were captured in 204 haplotypes. Within and among population variations were 77.25 and 22.74 percent, respectively. Nigerian goats showed high genetic diversity (0.87) and high FST values, and separate from Indian goats and other wild species. Haplogroups in WAD separates it from RSO and SAH concomitant with a different demographic history. Clear genetic structure was found among Nigerian goat breeds with appreciable variation in mtDNA HVR1 region. This study grouped Nigerian goat breeds into two major groups suggesting two different demographic origins for Northern and Southern breeds. High genetic admixing denotes different maternal origins and in contrast to evidence from goats from Levant and Central Asia, where goats were originally domesticated.

The goal of this study was to characterize the Hamra goat population and to determine if Hamra goats of Beni Arouss and Rommani regions belong to the same population. Eleven morphometric traits of 157 Hamra animals (94 from Beni Arouss and 63 from Rommani) were used for this study. Overall, heart girth, body length, height at withers (HaW), height at rump (HS), chest depth (ChD), pelvis width (PW), chest width (CW), cannon circumference, head length (HeL), head width (HeW) and horn length (HL) of Hamra goats averaged 81.3, 61.5, 64.8, 65.3, 40.9, 19.3, 20.2, 9.67, 28.0, 26.3 and 23.4 cm, respectively. The effect of region was significant only on HaW, PW, HeL, HeW and HL, indicating certain homogeneity among goats of the two regions. Moreover, the inter region variance component ranged from 0 percent (absence of variability) for HS, CW, ChD and ChD to 18.5 percent for HeL, suggesting that the variability of body measurements between Beni Arouss and Rommani regions is very low. The factor analysis revealed four factors, which accounted for 73.5 percent of the total variance. The most discriminant variables between the two populations were HeL, HeW, PW and CW. The Mahalanobis distance between the two populations was 1.197, suggesting that there was genetic exchange between the two populations. The discriminant analysis showed that 80.9 percent of Rommani and 50.0 percent of Beni Arouss individuals were classified into their respective population. Results obtained will help in developing improvement and preservation strategies for the Hamra goat population.

The Pirot sheep is a small Zackel that has been developed in the region of Pirot and the neighbouring municipalities in Serbia. Pirot sheep population has been reduced to only 60 animals in the Republic of Serbia. An overview of qualitative phenotypical and morphometrical characteristics of Pirot sheep from the Stara Planina is presented in this paper. The sheep included in this study belong to the last flock of the breed. The evaluation aims to obtain the phenotypical description of this indigenous breed as a phase of preservation strategy. Therefore, a total of 51 ewes and two rams were measured to obtain the detailed data concerning conformation. The phenotypical characteristics of animals included were also described. Based on the results, the Pirot sheep is a small breed with compact, slightly rectangular body frame (body length 115.40 percent of height at withers). The investigated sheep population was homogeneous, and morphological variations were limited to the data obtained in our research. The differences detected among different age groups were significant and reflected late maturing and slow growth of individuals. The comparison of the data determined by the evaluation of the modern population of Pirot sheep with the description from the older literature did not reveal that many significant changes of the morphological characteristics have occurred during the last 30 years. The small effective population and increasing inbreeding can threaten the efforts to preserve this sheep. The cultural heritage of the local community is also in danger due to the fact that the cornerstones of rural tradition in the area have been production of the three nationally important agricultural brands in Serbia – Pirot kilim (Pirot rug), Pirot/Stara Planina lamb and Pirot/Stara Planina Kachkaval cheese, all of which are depending on the Pirot sheep breeding. Additionally, some problems affecting the preservation of animal genetic resources in Serbia are reviewed with the focus on the Stara Planina. The research indicated that ex situ conservation should also be considered in the case of the Pirot sheep.

Kenya indigenous goat breeds (Capra hircus) have not been accurately described. Therefore, there is threat of erosion of unique genotypes such as those associated with adaptability and disease resistance, through indiscriminate crossbreeding. The Kenyan goats classification based on phenotype/morphology identifies three breeds: Small East African (SEA) goats, the Galla goat and crosses of SEA and the Galla. In the present study, we sampled goats from two main geographic regions of Kenya with pastoralist communities, the Maasai and Somali/Boran. DNA was extracted from whole blood and polymerase chain reaction amplified using primers flanking a fragment of Cytocrome-b and D-loop regions of mitochondria DNA. The sequences derived were analysed both within Kenya goat populations and also compared with phylogeographic-related datasets. These data show that the majority of Kenyan indigenous goats are not distinct and their genetic structure is very diverse; however, distinct haplogroups were present. Genetic diversity showed weak positive in Tajima D test for Kenyan indigenous goats, while the Iberian/Mediterranean/Middle-East dataset had a more pronounced negative value indicating that the two populations are under different selection pressure. These analyses enabled phylogenetic relationships between and within species and the comparisons of local goats to related breeds geographically. The information can be applied management of conservation-guided breeding programmes by crossing the indigenous breed's unique genes with high productivity traits from another source.

Development of the livestock industry and its role in poverty alleviation in developing countries depends on how adaptive the production systems are to changing global environmental and economic trends. This paper characterizes dairy production systems in India, Tanzania, Kenya and Nicaragua, and describes the genetic and breeding technologies that hold promise for the advancement of global development goals. The dairy value chain has been prioritized for development under the CGIAR research programme on Livestock and Fish in Tanzania (East Africa), India (South Asia) and Nicaragua (Latin America), while ILRI is involved in research on dairy development in Kenya. In all the countries, a large number of smallholder farmers operating mixed crop–livestock production systems play a significant role in dairy production. In Tanzania, Kenya and Nicaragua, milk is predominantly produced by cattle of genotypes that differ both across countries and among production systems within the same country. In India, buffaloes contribute to a larger proportion of the national milk than cattle. Information on productivity per animal and on optimal genotypes to utilize within the smallholder production systems of all the countries is however limited. Crossbreeding and artificial insemination were identified as the most widely utilized breeding and reproductive technologies. Only in Kenya is there a national organization conducting livestock recording and monitoring productivity, however, the proportion of the dairy cattle population enrolled in the recording system is small (<2.5 percent). In all the countries, enhanced and adequately planned use of breeding and reproductive technologies, complemented with the relevant infrastructure, is needed to sustainably increase dairy productivity. The capacities of actors in the dairy value chain need to be developed in order to properly implement and manage improvements.

In cattle, reduced reproductive efficiency of beef and milk production systems is attributed to nutritional factors, health, climate changes and ultimately to genetic characteristics of animals. However, under warm humid tropics genetic variations between breeds could reduce age first calving, calving interval and increase the life of cows. Sanmartinero and Casanareño creole breeds can improve cattle production due to the contribution of genetic variants that emerged in the process of adaptation to the harsh conditions of the Colombian Orinoqia. Currently, genes with known biological function are used as molecular markers to estimate livestock genetic diversity parameters, facilitating the identification and location of genetic loci within the genome that encode or regulate the expression of traits of economic interest. In Colombia Romosinuano cattle candidate genes of the Growth hormone / Insulin growth factor axis have been identified and are positively associated with age at first calving, calving interval, longevity and protection of the embryo growth to heat stress. However, native Colombian bovine breeds such as Casanareño and Sanmartinero, which are empirically recognized by having those characteristic, have not been subjected to those genetic analysis for candidate genes that may allow to promote added value to animals. The aim of this review is to document some reproductive and genetic parameters of Sanmartinero and Casanareño bovine brees that may give support the need to conduct molecular studies and justify their use in beef and milk production systems in the Colombian Orinoquia.

Many domestic breeds face challenges concerning genetic variability, because of their small population sizes along with a high risk of inbreeding. Therefore, it is important to obtain knowledge on their extinction risk, along with the possible benefits of certain breeding strategies. Since many domestic breeds face the same problems, results from such studies can be applied across breeds and species. Here a Population Viability Analysis (PVA) was implemented to simulate the future probability of extinction for a population of the endangered Danish Jutland cattle (Bos taurus), based on the software Vortex. A PVA evaluates the extinction risk of a population by including threats and demographic values. According to the results from the PVA the population will go extinct after 122 years with the current management. Four scenarios were created to investigate which changes in the breeding scheme would have the largest effect on the survival probabilities, including Scenario 1: More females in the breeding pool, scenario 2: More males in the breeding pool, scenario 3: Increased carrying capacity, and scenario 4: Supplementing males to the population through artificial insemination using semen from bulls used in the populations in past generations. All scenarios showed a positive effect on the population's probability of survival, and with a combination of the different scenarios, the population size seems to be stabilized.

Climate change affects the livestock populations. As temperature increases, the rainfall distribution patterns shifts. These indirectly change the ecosystems like changes in crop yield, alter the distribution of animal diseases, geographically restriction of rare breed populations and increased competition for resources. Therefore, the objective of the study was to quantify impacts of climate variability on livestock population dynamics and breed distribution patterns. The study was conducted in Gondar Zuria, Farta and Bahir Dar Zuria districts. The sites were selected based on agro-ecology and livestock distribution potential. Data were collected through desk reviews of different documents and studies, focused group discussions, key informants interviews and different projection models. The results revealed that 70 percent of respondents believed that the trends of livestock breed distribution varied from year to year and from agro-ecology to agro-ecology. The number of cattle and equines are decreasing from year to year due to climate variability. Particularly, the crossbred cattle population decreased in 1998, 2002 and 2008 due to shortage of rainfall, increments of temperature and feed shortage. A correlation analysis was used to quantify impacts of temperature and rainfall on livestock population dynamics and breed distribution. The analyses revealed that sheep (r = −0.535, P < 0.05) and cattle (r = −0. 512, P < 0.05) were negatively affected by climate variability. Whereas goats were having positive relationship (r = 0.345, P < 0.001). As the average maximum temperature steadily increases, the population dynamics of ruminant livestock fluctuated after the year 1996. About 92.2, 78 and 83.3 percent respondents in Farta, Gondar Zuria and Bahir Dar Zuria districts, respectively, stated that there is a fluctuation in amount of rainfall distribution during the main rainy seasons. About 84.5 percent of respondent of the three districts also believed that climate change made variation in rainfall distribution. About 52 percent of the respondents also suggested that if livestock is to be protected from climate change and related effects, changing the farming system with appropriate breed is important and can be achieved with the zero-grazing system. The farmers also recommended with stocking climate change adaptive and productive breeds. In conclusion, climate variability affected livestock population dynamics and breed distribution pattern negatively.