The complete covalent structure of a novel boar
DQH sperm surface protein resistant to many classical procedures
of enzymatic fragmentation was determined. The relative
molecular mass of the major form of this protein determined
by ESI-MS and MALDI-MS was 13,065.2 ± 1.0 and 13,065.1,
respectively. However, additional peaks differing by 162
Da (i.e., minus hexose), 365 Da (i.e., minus hexose and
N-acetylhexosamine), 146 Da (i.e., plus deoxyhexose), and
291 Da (i.e., plus sialic acid) indicated the heterogeneity
due to differences in glycosylation. The complete covalent
structure of the protein was determined using automated
Edman degradation, MALDI-MS, and post-source decay (PSD)
MALDI-MS, and shown to consist of N-terminal O-glycosylated
peptide followed by two fibronectin type II repeats. The
carbohydrates are O-glycosidically linked to threonine
10, as confirmed by PSD MALDI-MS of the isolated N-terminal
glycopeptide. Eight cysteine residues of the protein form
four disulfide bridges, the positions of which were assigned
from MALDI-MS and Edman degradation data. We conclude that
mass spectral techniques provide an indispensable tool
for the detailed analysis of the covalent structure of
proteins, especially those that are refractory to standard
approaches of protein chemistry.