Probabilistic Logic Programs (PLPs) generalize traditional logic programs and allow the encoding of models combining logical structure and uncertainty. In PLP, inference is performed by summarizing the possible worlds which entail the query in a suitable data structure, and using this data structure to compute the answer probability. Systems such as ProbLog, PITA, etc., use propositional data structures like explanation graphs, BDDs, SDDs, etc., to represent the possible worlds. While this approach saves inference time due to substructure sharing, there are a number of problems where a more compact data structure is possible. We propose a data structure called Ordered Symbolic Derivation Diagram (OSDD) which captures the possible worlds by means of constraint formulas. We describe a program transformation technique to construct OSDDs via query evaluation, and give procedures to perform exact and approximate inference over OSDDs. Our approach has two key properties. Firstly, the exact inference procedure is a generalization of traditional inference, and results in speedup over the latter in certain settings. Secondly, the approximate technique is a generalization of likelihood weighting in Bayesian Networks, and allows us to perform sampling-based inference with lower rejection rate and variance. We evaluate the effectiveness of the proposed techniques through experiments on several problems.

Evolutionary Biologists have long struggled with the challenge of developing analysis workflows in a flexible manner, thus facilitating the reuse of phylogenetic knowledge. An evolutionary biology workflow can be viewed as a plan which composes web services that can retrieve, manipulate, and produce phylogenetic trees. The Phylotastic project was launched two years ago as a collaboration between evolutionary biologists and computer scientists, with the goal of developing an open architecture to facilitate the creation of such analysis workflows. While composition of web services is a problem that has been extensively explored in the literature, including within the logic programming domain, the incarnation of the problem in Phylotastic provides a number of additional challenges. Along with the need to integrate preferences and formal ontologies in the description of the desired workflow, evolutionary biologists tend to construct workflows in an incremental manner, by successively refining the workflow, by indicating desired changes (e.g., exclusion of certain services, modifications of the desired output). This leads to the need of successive iterations of incremental replanning, to develop a new workflow that integrates the requested changes while minimizing the changes to the original workflow. This paper illustrates how Phylotastic has addressed the challenges of creating and refining phylogenetic analysis workflows using logic programming technology and how such solutions have been used within the general framework of the Phylotastic project.

We propose an interpretation of the first-order answer set programming (FOASP) in terms of intuitionistic proof theory. It is obtained by two polynomial translations between FOASP and the bounded-arity fragment of the Σ1 level of the Mints hierarchy in first-order intuitionistic logic. It follows that Σ1 formulas using predicates of fixed arity (in particular unary) is of the same strength as FOASP. Our construction reveals a close similarity between constructive provability and stable entailment, or equivalently, between the construction of an answer set and an intuitionistic refutation. This paper is under consideration for publication in Theory and Practice of Logic Programming

We show how a bi-directional grammar can be used to specify and verbalise answer set programs in controlled natural language. We start from a program specification in controlled natural language and translate this specification automatically into an executable answer set program. The resulting answer set program can be modified following certain naming conventions and the revised version of the program can then be verbalised in the same subset of natural language that was used as specification language. The bi-directional grammar is parametrised for processing and generation, deals with referring expressions, and exploits symmetries in the data structure of the grammar rules whenever these grammar rules need to be duplicated. We demonstrate that verbalisation requires sentence planning in order to aggregate similar structures with the aim to improve the readability of the generated specification. Without modifications, the generated specification is always semantically equivalent to the original one; our bi-directional grammar is the first one that allows for semantic round-tripping in the context of controlled natural language processing.

This paper describes how the Logic Programming System XSB combines top-down and bottom-up computation through the mechanisms of variant tabling and subsumptive tabling with abstraction, respectively.

It is well known that top-down evaluation of logical rules in Prolog has a procedural interpretation as recursive procedure invocation (Kowalski 1986). Tabling adds the intuition of short-circuiting redundant computations (Warren 1992). This paper shows how to introduce into tabled logic program evaluation a bottom-up component, whose procedural intuition is the initialization of a data structure, in which a relation is initially computed and filled, on first demand, and then used throughout the remainder of a larger computation for efficient lookup. This allows many Prolog programs to be expressed fully declaratively, programs which formerly required procedural features, such as assert, to be made efficient.