While lognormal distributions have been proposed as useful descriptors of recruitment variability, the very nature of the recruitment distributions is still debated.To account quantitatively for recruitment distributions,I here propose a Weibull exponential model;it derives from a simple and natural hypothesis for uncorrelated recruitment processes of spawning, hatching, growth and survival through the early life stages to the point of vulnerability to the fishery.The quantification of Weibull exponentials is particularly important with regards to extrapolations to low recruits that have not yet been observed.To test the Weibull exponential null-hypothesis, I examine annual time-series of recruitment in major aquatic stocks.The Weibull exponential quite describes the bulk (95%) of the recruitment distributions of widely differing stocks,while the remaining 5% of the largest recruits are occurring with a much larger rate than predicted by the Weibull exponential.Further, I study the inter-event times between unusually high numbers in recruitment time-series data and find that intermittent pulses of strong recruitment follow non-Poisson statistics, which arises from year-to-year persistence of the magnitude of recruitment:large (or small) recruits are more likely to be followed by large (or small) recruits.This recruitment clustering effect is confirmed by the rescaled range analysis method.The empirical results imply that individual survivals on recruitment levels are independent of initial cohort sizes but year-to-year recruiting events exhibit long-term correlations.

We investigated spatial patterns of stony corals, molluscs and echinoderms among six habitat types within the lagoons of six atolls in the Tuamotu Archipelago (French Polynesia). Percent cover (stony corals only), abundance and richness were recorded within habitat types delineated by specific geomorphological features. Among six habitat types defined a priori, four encompassed distinct assemblages of corals and molluscs: (1) pinnacles possessed maximum richness, abundance and coverage, (2) passes showed relatively high abundance and coverage, (3) lagoon floors were marked by the commonness of a few coral genera, and minimum mollusc abundance and richness, and (4) inner reef flat stations, independent of their location in front of spillways, motu or rim zones, had low cover, abundance, and richness. While habitat associations were similar for stony corals and molluscs, echinoderms were preferentially found on the inner reef flat facing the rim. Lowest echinoderm abundances and species richness were recorded on pinnacles and in the vicinity of the pass. Such small-scale spatial heterogeneity appears to be one of the distinctive characteristics of coral communities in French Polynesian reefs. These results, along with those of the TYPATOLL program, demonstrate the importance of both local and regional factors in determining the diversity and structure of coral assemblages. Habitat fidelity was weak: many species/genera were poorly represented among habitats and restricted to a few atolls, while others were present across all lagoons and habitats. Therefore, marine protected areas design based solely on representativeness will require the protecting the vast majority of lagoon habitats.

The necessity to move from a traditional fishery management to an ecosystem approach is now acknowledged. Indicators are required to support the development of this approach. For example, community indicators have been proposed to assess the impact of fishing. We tested here the applicability of one such community indicator, the abundance-biomass comparison (ABC method), as a measure of the impact of bottom trawling (years of sampling: 2001 and 2003) on the benthic invertebrates – typically starfishes, crabs, squat lobsters, shrimps and large hard-shelled molluscs- of “Grande Vasière”, a major French fishing zone, in the Bay of Biscay. The ABC method is generally used as an impact indicator for different types of physical, biological and anthropogenic disturbances on benthic communities. This method is based on the assumption that increasing disturbance shifts communities from dominance by large-bodied species with low turnover rates toward dominance by small-bodied species with high turnover rates. At less disturbed areas the average biomass of individuals is greater than at more heavily disturbed areas. The ABC method measures this effect by comparing the ranked distributions of abundance and biomass within a given community. We applied the ABC method and compared the size structure and the species diversity at two areas exposed to moderate and high bottom trawl effort. Species diversity was lower in the most exploited area. The highly trawled area was dominated by opportunistic organisms, mainly one species of swimming crab Liocarcinus depurator, one species of squat lobster Munida rugosa and Norway lobsters Nephrops norvegicus, which are large-bodied species. Consequently, the results of the ABC method were inconsistent with the theoretical expectation for these particular macrofaunal communities and the measured levels of fishing intensity. 


Twelve diel surveys were carried out in three reservoirs of Sri Lanka viz. Minneriya, Udawalawe and Victoria, to investigate diel feeding patterns, daily ration and relative food consumption in fish populations. Stomach content weights of different size classes of various fish species in the three reservoirs in 12 diel surveys were analysed using an iterative method, MAXIMS. Predominantly herbivorous or detritivorous fish species such as Amblypharyngodon melettinus and Oreochromis niloticus exhibited one peak in the diel feeding pattern. Two peak feeding periods were evident in predominantly insectivores and/or zooplanktivores (e.g., Puntius chola and Rasbora daniconius) and interestingly in macrophyte feeders (i.e., Etroplus suratensis, Puntius filamentosus and Tilapia rendalli). It might be possible that all species with two feeding peaks in diel feeding patterns rely on vision for feeding.Food consumption per biomass (Q/B ratio) defined as amount of food consumed per unit weight of an age-structured population of fish was estimated on the basis of the average quantities of food consumed over a long period of time by various size classes in order to minimize the bias of estimates.

Tilapia species are able to hybridize in captivity or in natural conditions following introduction of alien species. Here, we report a case of hybridization between two (and perhaps three) autochthonous species, Tilapia zillii and T. guineensis, resulting from a modification of their environment due to human activities. The man-made dam Ayamé (Côte d'Ivoire) transformed the River Bia into a lake (Lake Ayamé, area: 197 km2). In this new environment, both tilapia species have hybridized. In order to study hybridization along the Bia System, 25 allozyme loci have been screened in 470 specimens from ten locations. Two loci LDH-1 and PGI-2 were diagnostic between the two different species and can be used to identify hybrids in each sampling location of the River Bia basin. The percentage of pure T. zillii individuals in Lake Ayamé varied from 18.1% in Ebikro to 4.2% in Kétesso while percentage of pure T. guineensis varied from 81.3% in Yaou to 50.0% in Ebikro. The proportions of hybrids varied from 8.3% in Yaou to 31.9% in Ebikro. The existence of private alleles observed in tilapia from Lake Ayamé compared to what has been observed in both reference populations, T. zillii and T. guineensis led to the hypothesis that a third species could have been engaged in this hybridization. This third species is likely to be T. busumana, formerly present in the lake but now rarely observed. If this natural hybridization is due to the dam construction and the correlated ecological changes, then other hybridizations could result since many dams have been constructed within the range of these species in Côte d'Ivoire.

The Bay of Bourgneuf, France, is a main site of shellfish production. In the marshes along the bay, oyster intensive rearing and fattening need the mass production of microalgae. Salt groundwaters, available in this region, support a large part of this production for aquaculture. Studies carried out by local authorities have brought to the fore the accumulation of lead (Pb) in several samples of algal pastes derived from cultures using salt groundwater. The aim of this study was to compare growth, nutritional value and metal (Cd, Cu, Pb and Zn) uptake of four microalgae grown in two salt groundwaters or in enriched coastal seawater. Cultures of microalgae used in aquaculture (Haslea ostrearia, Phaeodactylum tricornutum, Skeletonema costatum and Tetraselmis suecica) were realised at the laboratory under controlled experimental conditions. Results indicated that salt groundwaters provided cultures with, at least, an equal biomass and a nutritional value similar to cultures grown in enriched seawater. There was no difference regarding metal accumulation whatever the culture medium, except when S. costatum was grown in one of the salt groundwater in which case its cadmium levels were higher and could be above the French guideline level. These observations questioned on the bioavailability of metals in salt groundwaters. It also underlines the specificity of metal uptake and accumulation by microalgae.

The depuration kinetics of the domoic acid from three body parts (i) digestive gland, (ii) adductor muscle+gonad+kidney+foot and (iii) gills+mantle of the scallop Pecten maximus was studied over 154 days. The scallops, which had accumulated the toxins during a Pseudo-nitzschia australis outbreak, were obtained from a natural bed and hung from a mussel raft in two locations (front and centre) and at three depths (2, 6 and 10 m). The time course of the depuration of domoic acid (DA), as well as the environmental variables, were monitored throughout the experiment. The whole body depurated the toxin very slowly (ca 0.007 day−1) decreasing its concentration from ca. 3200 µg DA g−1. Its kinetics was driven mostly by the digestive gland, which accounted for ca. 95% of the total toxin burden from the start of the experiment. Suspending the scallops from a raft increased the depuration rate of the whole body and digestive gland (ca. 30%) and of the edible tissues (15%). Increases of the depuration rate of domoic acid seem to be related to the pair of covariating variables temperature-salinity. Food amount does not seem to have a significant effect.

The impact of toxic outbreaks of Gymnodinium catenatum, producer of paralytic shellfish poisoning toxins (PSP toxins) and Pseudonitzschia spp., producer of amnesic shellfish poisoning toxins (ASP toxins), was studied throughout the culture cycle of the king scallop Pecten maximus (length from 40 to 100 mm). Toxin concentration, in plankton and in the digestive gland of the scallops, other variables that describe the state of the cultured scallops (mortality, growth, length/weight ratio, gonadosomatic index) and the main environmental conditions (temperature and in vivo fluorescence) were determined from December 2001 to April 2003. Temperature ranged from 14 °C during the winter to 22 °C at the end of July. In vivo fluorescence ranged from not detectable to 25 relative units, with a maximum also recorded at the end of July. ASP toxin levels, in both plankton and organisms, were high during the first half of the sampling period (maximum 450 ng domoic acid L−1, in plankton, and 175 µg·g−1 of scallop digestive gland) when the scallops were juvenile. PSP toxins attained larger concentrations in the second half of the sampling period (maximum of 1.8 nmol L−1 in plankton and 550 nmol g−1 of digestive gland, of gonyautoxins after hydrolysis). Several mortality events took place during the period studied, but none of them coincided neither with an ASP or PSP outbreak nor with long exposure of the scallops to these toxins. One of the recorded mortalities occurred simultaneously with a high concentration of PSP in the scallops, but also with an important spawning. Additionally, it was not coincidental with the bloom of toxic plankton, thus, post-spawning stress seemed to be the main responsible for the mortality. No appreciable effect of ASP or PSP toxinson growth or reproductive state of the cultured scallops was found. Therefore, neither ASP nor PSP toxins appeared to represent a direct threat to the culture of Pecten maximus in that case.

Restoration of shellfish populations is becoming an increasingly common practice worldwide, as natural fisheries succumb to pressures of overharvesting, habitat loss or degradation, and challenges from invasive competitors and pathogens. Primary genetic concerns relevant to shellfish restoration projects are reviewed, using the cupped oysters Crassostrea gigas and Crassostrea virginica as case studies. Molecular genetic tools can be used to delineate the geographic distribution of germ plasm diversity at the species and intraspecific levels, enabling more informed selection of genetic material for hatchery breeding and production. Maintenance of genetic variability and prevention of excessive inbreeding in hatchery stocks may be facilitated by the use of genetic markers for regular pedigree monitoring. The effect of hatchery supplementation on the effective population size of a recipient wild population (Ryman-Laikre effect) is reviewed in light of the population biology of bivalve molluscs, and appears to be minimal. Deployment of selected enhancement stocks may be a valuable tool for improvement of degraded wild populations, reversing the negative effects of generations of selective harvesting. Molecular genetic tools can be used effectively to monitor restoration programs, when the discriminatory power of the marker(s) is high and high-throughput scoring methods currently available are used.

Throughout much of the UK and in Europe generally the native oyster is in a severely depleted state in the wild. In order to address and potentially to reverse this situation Ostrea edulis was designated as a named species in the UK Biodiversity Action Plan as part of a national commitment to the International Convention on Biodiversity. Amongst other initiatives, some of which are summarised in this paper, a feasibility study was carried out to evaluate all the factors, including an economic assessment, relevant to a programme of stock restoration in the UK. The study showed that there is a considerable body of data on the biology, ecology and distribution of O. edulis to inform restoration projects. Appropriate legislation is in place to allow for restoration. Non-marketable costs and benefits were estimated. They provide an idea of the high value that may be placed on biodiversity aspects. Nevertheless, this study also shows that stock restoration can be commercially viable if fishery prices and yields are sufficiently high. Restoration efforts and associated studies elsewhere have shown the potential for success of native oyster stock regeneration, especially in disease-free areas. For these, there is a very strong element of re-creating and conserving an ecological resource. The relaying of cultch is seen as an essential component of a successful oyster restoration programme and the use of sanctuaries is generally considered beneficial. The loss of the standing stock is a limiting factor and re-stocking is an effective strategy. There is a basic genetic similarity of wild European O. edulis populations such that the source of stocks is not critical. There are some problems with hatchery rearing from these, but using breeding ponds or importing part-grown oysters are viable alternatives.

Two sites in North Wales, UK, were compared for growth, survival, immunocompetence and gonad development of Crassostrea gigas. Juvenile C. gigas spat were purchased as a cohort and placed in bags on trestles at the Menai Strait (MS, two heights on the shore) and the Inland Sea (IS) in the summer of 2003. Performance was examined as a function of several environmental parameters; temperature, coloured dissolved organic material absorption coefficient (cDOM), organic and inorganic nutrient levels, chlorophyll a and phytoplankton community composition.Both sites produced variations in growth, as assessed by dry weight indices and condition index, which were found to be lower at IS, where the animals were permanently immersed, than at MS, where they were emersed for at least 1 h/tide (at the low shore height) and 4 h/tide (at the high shore height) during spring tides. Condition index was also significantly higher at MS high shore than at MS low shore. Mortality was low at all sites, though an increase at IS at the end of the trial led to a significantly greater final percentage mortality of 15.6%. Gonad development was limited, particularly at IS where most animals remained undifferentiated. Gonad development was significantly higher at MS high shore than at MS low shore. cDOM, organic and inorganic nutrients were similar at the two areas. At IS the temperature and chlorophyll a levels were higher than MS. The phytoplankton communities were significantly different, with a bloom of Prorocentrum micans dominating at the Inland Sea for much of the experimental period. Differences in the hydrodynamics, as well as Phytoplankton community appeared to be the only parameters that might cause a lower growth rate in the Inland Sea. The possibilities of P. micans having a sub-lethal effect on C. gigas are discussed.

This paper deals with the economic impact of the invasion of a scallop fishery by an exotic shellfish that was accidentally imported some decades ago. The invasive alien species, a slipper-limpet, Crepidula fornicata, is a space competitor for local scallops, and its spread threatens the sustainability of the ongoing scallop restocking program. Facing this invasion, the local fisheries committee has initiated a containment project intending to make the restocking program consistent with the exotic species presence in the fishery. The issue is complicated by the occurrence of occasional toxic micro-algae blooms affecting the scallop fishery. The paper presents a model dealing with the economic impact of the invasive process, and a methodology for cost-benefit analysis of invasion management. According to numerical simulation, the invasion is a serious threat to the economic viability of the restocking program, and invasion management would help maintaining the long term sustainability of the fishery. Sensitivity tests highlight the importance of long term equilibrium scallop catches on the program result, depending on scallop farming technical performance and ecosystem disturbance.