Land use intensification imposes selective pressures that systematically change the frequency of wild population phenotypes. Growing evidence is biased towards the comparison of populations from discrete categories of land uses, ignoring the role of landscape emerging properties on the phenotype selection of wild fauna. Across the largest urban–rural gradient of the Colombian Orinoquia, we measured ecomorphological traits of 216 individuals of the flat-faced fruit-eating bat Artibeus planirostris. We did this to evaluate the scale of effect at which landscape transformation better predicts changes in phenotype and abundance of an urban-tolerant species. Forest percentage at 1.25 km was the main predictor affecting negatively bat abundance and positively its wing aspect ratio and body mass. Landscape variables affected forearm length at all spatial scales, this effect appeared to be sex-dependent, and the most important predictor, forest percentage at 0.5 km, had a negative effect on this trait. Our results indicate that landscape elements and spatial scale interact to shape ecomorphological traits and the abundance of A. planirostris. Interestingly, the scale of effect coincided at 1.25 km among all biological responses, suggesting that species’ abundance can be linked to the variation on phenotype under different environmental filters across landscape scenarios.

Inland dune ecosystems are rich in terricolous lichen species. However, these communities are sensitive to human activities, both locally and globally. Since terricolous lichens have a dominant role in semi-arid sandy grasslands, it is important to explore the composition of their communities and the environmental factors affecting them. We studied the structure of the terricolous lichen assemblages of calcareous grassland in an inland duneland ecosystem by comparing the lichen communities of arid and humid dune sides on two sites with different disturbance histories. Microcoenological data were collected according to the Braun-Blanquet method. Environmental variables include the cover of bare soil, moss, litter, herb cover and height of herbs. We investigated the relationship of these variables and the presence and absence data of terricolous lichen species to sites and dune side. We found that the site had a significant effect on species richness that might reflect the different types and severity of previous disturbance events at the studied sites. On a smaller, ‘dune’ scale, in general lower herb cover and height and a higher moss cover were characteristic of arid dune sides. Most of the frequent species were negatively affected by higher moss cover. Some lichen species were more abundant (e.g. Cladonia furcata) or found only (e.g. Xanthoparmelia subdiffluens, Gyalolechia fulgens) on arid dune sides, while others preferred (e.g. C. pyxidata) or occurred only on (e.g. Peltigera species, C. rei) humid sides. It was observed that the impact of the dune side on several variables differed between sites. The diverse microhabitat types, microclimate and landscape structure, results in species-rich and valuable terricolous lichen communities forming in inland dune ecosystems.

African forests are under increasing pressure to supply local, regional, and international demand for timber. Much of this trade is unregulated, such that there is increasing concern regarding the ecological sustainability of this resource use. However, there is a lack of studies investigating the ecological impact of informal timber harvesting in African forests. While forest species have adapted to natural canopy gap dynamics, harvesting may alter natural disturbance regimes, with adverse effects on biodiversity. Information regarding harvest gaps, and concomitant impacts on habitat and biodiversity is thus essential to inform sustainable management. This study compared the frequency and nature of harvest gaps and natural gaps in a coastal forest in the Eastern Cape, South Africa, where informal selective timber harvesting occurs. Habitat condition and bird species richness and composition were compared across intact forest, natural gaps, and harvest gaps. Harvest-created gaps increased the number of canopy gaps by 30%, but were comparable with natural gaps in size. Habitat conditions in harvest gaps represented an intermediate state between intact forest and natural gaps, thereby increasing forest-scale habitat heterogeneity. While bird species richness was not affected, species composition differed across intact forest, harvest gaps and natural gaps, driven by changes in habitat condition, and mediated by species’ feeding and nesting traits. Specifically, insectivores, cavity- and ground-nesting species, and hawking and arboreal probing species were negatively affected by the habitat gradient from intact sites to canopy gap conditions, while nectarivores, omnivores and ball/cup nesting species were positively affected. Thus, while the single-tree selective harvesting method used by informal harvesters largely emulated natural canopy disturbances, the harvest-mediated increase in the frequency of canopy gaps may reduce the abundance of certain bird species sensitive to canopy gap conditions and reduce forest-scale beta-diversity.

In animal breeding, genetic parameters along with economic weights (EWs) of traits are applied. Profit functions currently used to calculate rabbit traits’ EWs do not consider nutrient requirements based on animal weight, growth rate and doe reproductive status. Therefore, the aim of this study was to develop a flexible bioeconomic model of rabbit-production systems and implement it in a computer programme in order to calculate economic values and relative EWs for rabbit traits. The bioeconomic model includes calculation of the doe age structure in the stationary state of a doe population; calculation of progeny structure; modelling growth, digestible energy, feed and water requirements for does in different reproductive statuses and for all progeny groups using a normative approach; calculation of the total feed and non-feed costs, revenues and profit per doe and per year; calculation of marginal economic values for up to 20 production and functional traits and estimation of the relative EWs of selected traits. The application of the programme is shown through an example calculation of trait economic values for a typical Czech commercial rabbit-production system. The trait economic value expresses the change in profit per doe and per year when the trait mean is increased by one unit. The programme developed is primarily useful for selection purposes in rabbit-breeding systems. Using this programme, some economic analyses of the impact of production, management and economic circumstances on the economic efficiency of various rabbit-production systems can also be performed.

Human activities change the biodiversity of ecological communities in at least three dimensions: ecologically, taxonomically and functionally. Gathering information on these three dimensions allows the improvement of biodiversity assessments and the increased understanding of anthropogenic impact on natural communities. In this study, we analysed the spider community associated with the tropical plant Heliconia aurantiaca in two contrasting habitat types: continuous forest and forest fragments in south-eastern Mexico. We examined the foliage, stems and bracts of H. aurantiaca individuals in both habitats. We categorized each spider species according to its behavioural and functional traits. We analysed ecological diversity using Hill numbers, taxonomic distinctness and functional diversity using the FRic index. Overall, we collected a total of 110 spiders, of which 44 individuals from 29 species were found in continuous forests, with 66 individuals from 36 species in forest fragments. We found greater ecological diversity in continuous forest than in fragments. In contrast, we found lower functional diversity in continuous forest than in fragments. Taxonomic diversity showed no significant difference between habitats. Forest fragmentation affected the biodiversity of spiders by disrupting species composition and function, which may lead to other ecological changes such as predator–prey interactions and other aspects of ecosystem functioning.

The focus of community ecology has shifted from the description of taxonomic composition towards an understanding of community assembly based on species’ ‘functional traits’. The functional trait approach is well developed for vascular plants, utilising variability of continuous phenotypic characters that affect ecological fitness, such as specific leaf area, tissue nitrogen concentration or seed mass, to explain community structure. In contrast, community assembly studies for poikilohydric cryptogamic plants and fungi, such as lichens, remain focused on broad categorical traits such as growth form difference: fruticose, foliose or crustose. This study examined intra- and interspecific variability for two highly promising continuous phenotypic measurements that affect lichen physiology and ecological fitness: water-holding capacity (WHC) and specific thallus mass (STM). Values for WHC and STM were compared within and among species, and within and among key macrolichen growth forms (fruticose and green-algal and cyanolichen foliose species), asking whether these widely used categories adequately differentiate the continuous variables (WHC and STM). We show large intra- and interspecific variability that does not map satisfactorily onto growth form categories, and on this basis provide recommendations and caveats in the future use of lichen functional traits.

The success in competitions may be stressful for animals and costly in terms of immune functions and longevity. Focusing on Aosta Chestnut and Aosta Black Pied cattle, selected for their fighting ability in traditional competitions, this study investigated the genetic relationships of fighting ability with udder health traits (somatic cell score and two threshold traits for somatic cells), longevity (length of productive life and number of calvings) and test-day milk, fat and protein yield. Herdbook information and phenotypic records that have been routinely collected for breeding programs in 16 years were used for the abovementioned traits. Data belonged to 9328 cows and 19 283 animals in pedigree. Single-trait animal model analyses were run using a Gibbs sampling algorithm to estimate the variance components of traits, and bivariate analyses were then performed to estimate the genetic correlations. Moderate positive genetic correlations (ra) were found for fighting ability with somatic cell score (ra=0.255), suggesting that greater fighting ability is genetically related to a detriment in udder health, in agreement with the theory. The high positive genetic correlation between fighting ability and longevity (average ra=0.669) suggests that the economic importance of fighting ability (the winning cows get an higher price at selling) had probably masked the true genetic covariances. The genetic correlation between milk yield traits and fighting ability showed large intervals, but the negative values (average ra=−0.121) agreed with previous research. This study is one of the few empirical studies on genetic correlations for the competitive success v. immune functions and longevity traits. The knowledge of the genetic correlations among productive and functional traits of interest, including fighting ability, is important in animal breeding for a sustainable genetic improvement.

Lobaria pulmonaria is a widespread epiphytic foliose lichen that exhibits a prominent reticulum, a structure that has a presumed role in mechanical support and water capture. Using photogrammetry, thallus topography was digitally modelled in three dimensions to calculate 3D surface area (A3D), which was consistently greater than areas extracted from projected images (A2D). The A3D:A2D ratio, a proxy for topographic three-dimensionality, was strongly correlated with both specific thallus mass (STM) and external water-holding capacity (WHCexternal), suggesting that the reticulum in L. pulmonaria extends hydration, photosynthetic activity and growth, following rainfall. Three-dimensionality was more pronounced in larger thalli, which is likely beneficial to liquid water-dependent internal cephalodia that occur more in older thalli and most often within the fovea.

The functional composition of plant communities in montane regions has been studied for decades, and most recent analyses find that environmentally favourable landscapes at lower altitudes tend to be dominated by species with resource-acquisitive traits, while more resource-conservative taxa dominate higher-altitude communities. However, it is unclear the extent to which this pattern is driven by co-gradient variation within clades or changes in clade representation across the gradient. To test for co-gradient variation, species composition, phylogenetic structure and functional traits were quantified for 97 species within the plant family Melastomataceae at five locations across a 2500-m altitudinal gradient along Volcán Barva in Costa Rica. Average melastome leaf force to punch, specific leaf area and leaf size vary with altitude, while four other functional traits do not. Taxonomic dissimilarity between communities was correlated with altitudinal difference, while phylogenetic dissimilarity was correlated with altitudinal dissimilarity only when measured with a metric that emphasizes shallow turnover of the tips of the phylogeny. These results highlight how species turnover may be more pronounced than functional or phylogenetic variation along altitudinal gradients. In addition, these results highlight the conservation value of lowland tropical forests, which here harbour a disproportionate amount of phylogenetic and functional diversity.

Certain forestry and agricultural practices are known to affect arbuscular mycorrhizal (AM) fungal communities, but the effects of deforestation – including slash-and-burn management and other more severe disturbances – in tropical rain forests are poorly understood. We addressed the effects of anthropogenic disturbance on rain-forest AM fungal communities in French Guiana, by comparing mature tropical rain forest, slash-and-burn (5 y old) and clearcut areas (8 y old). A total of 36 soil samples were collected in six plots and sequenced using a high throughput 454-pyrosequencing platform. A total of 32649 sequences from 103 AM fungal virtual taxa (VT) were recorded. Whereas alpha diversity of AM fungi did not decrease due to land-use intensification, with average richness ranging from 17 to 21 taxa per plot, beta diversity (average distance to multivariate centroid) dropped by 28% from 0.46 in rain forest to 0.33 under clearcutting. AM fungal community composition was correlated with land use and soil chemical properties. Clearcut areas were characterized by the more frequent occurrence of specialist AM fungi, compared with mature forest or slash-and-burn areas. Specifically, clearcuts contained the highest proportions of VT that were geographic (21%), habitat (31%), abundance (97%) or host (97%) specialists based on VT metadata contained in the MaarjAM database. This suggests that certain AM fungi with narrow ecological niches have traits that allow them to exploit conditions of severe disturbance. In conclusion, slash-and-burn management appears to allow diverse AM fungal communities to persist, and may favour regeneration of tropical rain forest after abandonment. More severe disturbance in the form of clearcutting resulted in marked changes in AM fungal communities.

This paper, based on data from the latest checklist of Italy, analyzes the distribution patterns of rare and common lichen species within biogeographically homogeneous versus heterogeneous areas of Italy, and the relationships with some main drivers of rarity and commonness. The following data were used: 1) commonness-rarity values of 2565 species in nine ecoregions; 2) frequency of 353 nationally rare and 387 nationally common species in 21 administrative regions. The following functional and ecological traits were considered: growth form, photobiont(s), type of reproduction, substrata, bioclimatic range, ecological indicator values for aridity and eutrophication, and poleophoby. Within each ecoregion, rare species by far outweigh common species but about one third of these are common in other ecoregions. At the level of regional floras, rarity is significantly associated with epiphytic substrata, non-trebouxioid photobionts and high air humidity, while commonness is associated with saxicolous substrata, trebouxioid photobionts and eutrophication. Rarity seems to mainly depend on two factors, bioclimate (many rare species are outside the limit of their bioclimatic optima) and reduced availability of suitable habitats (e.g. old-growth forests), while commonness is mainly related to disturbance (eutrophication, creation of drier habitats). Most of the nationally rare lichens belong to an oceanic-suboceanic element with tropical affinities or to a small set of continental species with their optima in the dry steppe biome, which suggests that many rare species can persist in microrefugia, that is sites with microclimates that support small populations of species beyond the boundaries of the climatic limits of their main distributions.

Although ecological succession is one of the principal focuses of recent restoration ecology research, it is still unclear which factors drive this process and positively influence species richness and functional diversity. In this study we sought to elucidate how species traits and functional diversity change during forest succession, and to identify important factors that determine the species in the observed assemblages. We analyzed species richness and functional diversity of ground beetle assemblages in relation to succession on post-industrial localities after habitat deterioration caused by spoil deposition. We selected ground beetles as they are known to be sensitive to landscape changes (with a large range of responses), and their taxonomy and ecology are generally well-known. Ground beetles were sampled on the spoil heaps during the last 30 years when spontaneous succession occurred. To calculate functional diversity, we used traits related to habitat and trophic niche, i.e. food specialization, wing morphology, trophic level, and bio-indication value. Ground beetle species were found to be distributed non-randomly in the assemblages in the late phase of succession. Ordination analyses revealed that the ground beetle assemblage was significantly associated with the proportion of forested area. Environmental heterogeneity generated assemblages that contained over-dispersed species traits. Our findings indicated that environmental conditions at late successional stages supported less mobile carnivorous species. Overall, we conclude that the decline in species richness and functional diversity in the middle of the studied succession gradient indicated that the assemblages of open habitats had been replaced by species typical of forest ecosystems.

Re-seeding efforts to restore or rehabilitate Great Basin rangelands invaded by exotic annual grasses are expensive and have generally achieved limited success. There is a need to identify new strategies to improve restoration outcomes. We tested the performance of a native early seral seed mix (annual forbs, early seral grasses and shrubs) with that of a native late seral mix representative of species commonly used in restoration when growing with medusahead in soils of contrasting texture (sandy loam and clay loam) through the first growing season after seeding. Natives were also seeded without medusahead. We found that the grasses and forbs in the early seral mix established significantly better than those in the late seral mix, and the early seral mix significantly reduced aboveground biomass and seed production of medusahead by 16 and 17% respectively, likely because of competition with the early seral native forb, bristly fiddleneck. Medusahead performance was reduced in both soil types, suggesting utility of bristly fiddleneck in restoration is not limited to only one soil type. In contrast, the late seral mix did not suppress medusahead establishment, aboveground biomass or seed production. Although the native perennial grasses, particularly early seral species, were able to establish with medusahead, these grasses did not appear to have a suppressive effect on medusahead during the first growing season. Medusahead was able to establish and produce seeds on both soil types, demonstrating an ability to expand its current range in the Intermountain West, though aboveground biomass and seed production was higher in the clay loam. Our results suggest that certain species may play a key role in restoration, and that targeting early seral species in particular to find additional native species with the ability to suppress exotic annual grasses is an important next step in improving restoration outcomes in desert ecosystems.

The intensification of crop management in the U.K. over the past 60 years has resulted in the decline of the populations of a number of annual plant species adapted to arable habitats. In contrast, other species continue to be common as arable weeds. A community assembly approach was taken to explain these recent changes in the weed flora using databases of plant functional traits, a pot experiment, and weed surveys of the Broadbalk long-term experiment. The hypothesis was tested that species that have been selected against by increased fertilizer inputs and herbicide use share an adverse combination of traits. An analysis comparing the combination of maximum height, seed weight, and time of first flowering of 29 common and 32 rare or threatened U.K. autumn weeds established that rare or threatened species occupied an area of trait space that was distinct from the common species. A rare weed trait syndrome of short stature, large seed, and late flowering was identified. The theory that species with a trait syndrome that is currently unfavorable are better adapted for less fertile environments was supported by the pot experiment. Species with a combination of short stature and large seed had a relatively greater competitive ability in low compared to high fertility treatments. Analysis of survey data from the Broadbalk long-term experiment confirmed that, as N inputs increased, the abundance of the two functional groups that contained only common species remained stable or increased; whereas, the groups dominated by rare or threatened species declined as fertility increased. An understanding of the response traits of arable plants to management filters, including fertilizer inputs and herbicide, is valuable for designing conservation strategies for rare species or predicting future shifts in the functional diversity of weed communities including the potential for invasive species to establish.

Staphylinid beetles are recommended bioindicators for the pre-market environmental risk assessment of genetically modified (GM) insect protected maize expressing the Cry3Bb1 toxin. Our multiannual study is a unique European analysis of a staphylinid community within a 14 ha maize field. GM maize, its near-isogenic hybrid (with or without insecticide treatment), and two other reference hybrids were each grown in five 0.5 ha plots. The opportunity for exposure to Cry toxin from plant residues ploughed into the soil was shown by the presence of saprophagous dipteran larvae that are common prey of predatory staphylinid species and hosts of the parasitoid species. 2587 individuals belonging to 77 staphylinid species were sampled using pitfall traps. Lesteva longoelytrata (31%), Oxypoda acuminata (12%), Aloconota sulcifrons (8%) and Anotylus rugosus (7%) were the most abundant beetles in the field. Bionomics, food specialization, temperature requirements and size group were assigned for 25 most common species. These traits determine the occurrence of staphylinid beetles in the field, the food sources they could utilize and thus also their likely contact with the Cry3Bb1 toxin. Statistical analysis of activity abundance, Rao indices and multivariate analysis of distribution of particular categories of functional traits in the field showed negligible effects of the experimental treatments, including the GM maize, upon the staphylinid community. Staphylinid beetles represent a considerably diverse part of epigeic field fauna with wide food specialization; these features render them suitable for the assessment of environmental safety of GM insect protected maize. However, the availability of prey and the presence of particular staphylinid species and their abundance are highly variable; this complicates the interpretation of the results.

For several decades, breeding goals in dairy cattle focussed on increased milk production. However, many functional traits have negative genetic correlations with milk yield, and reductions in genetic merit for health and fitness have been observed. Herd management has been challenged to compensate for these effects and to balance fertility, udder health and metabolic diseases against increased production to maximize profit without compromising welfare. Functional traits, such as direct information on cow health, have also become more important because of growing concern about animal well-being and consumer demands for healthy and natural products. There are major concerns about the impact of drugs used in veterinary medicine on the spread of antibiotic-resistant strains of bacteria that can negatively impact human health. Sustainability and efficiency are also increasingly important because of the growing competition for high-quality, plant-based sources of energy and protein. Disruptions to global environments because of climate change may encourage yet more emphasis on these traits. To be successful, it is vital that there be a balance between the effort required for data recording and subsequent benefits. The motivation of farmers and other stakeholders involved in documentation and recording is essential to ensure good data quality. To keep labour costs reasonable, existing data sources should be used as much as possible. Examples include the use of milk composition data to provide additional information about the metabolic status or energy balance of the animals. Recent advances in the use of mid-infrared spectroscopy to measure milk have shown considerable promise, and may provide cost-effective alternative phenotypes for difficult or expensive-to-measure traits, such as feed efficiency. There are other valuable data sources in countries that have compulsory documentation of veterinary treatments and drug use. Additional sources of data outside of the farm include, for example, slaughter houses (meat composition and quality) and veterinary labs (specific pathogens, viral loads). At the farm level, many data are available from automated and semi-automated milking and management systems. Electronic devices measuring physiological status or activity parameters can be used to predict events such as oestrus, and also behavioural traits. Challenges concerning the predictive biology of indicator traits or standardization need to be solved. To develop effective selection programmes for new traits, the development of large databases is necessary so that high-reliability breeding values can be estimated. For expensive-to-record traits, extensive phenotyping in combination with genotyping of females is a possibility.

It is well documented that global warming is unequivocal. Dairy production systems are considered as important sources of greenhouse gas emissions; however, little is known about the sensitivity and vulnerability of these production systems themselves to climate warming. This review brings different aspects of dairy cow production in Central Europe into focus, with a holistic approach to emphasize potential future consequences and challenges arising from climate change. With the current understanding of the effects of climate change, it is expected that yield of forage per hectare will be influenced positively, whereas quality will mainly depend on water availability and soil characteristics. Thus, the botanical composition of future grassland should include species that are able to withstand the changing conditions (e.g. lucerne and bird's foot trefoil). Changes in nutrient concentration of forage plants, elevated heat loads and altered feeding patterns of animals may influence rumen physiology. Several promising nutritional strategies are available to lower potential negative impacts of climate change on dairy cow nutrition and performance. Adjustment of feeding and drinking regimes, diet composition and additive supplementation can contribute to the maintenance of adequate dairy cow nutrition and performance. Provision of adequate shade and cooling will reduce the direct effects of heat stress. As estimated genetic parameters are promising, heat stress tolerance as a functional trait may be included into breeding programmes. Indirect effects of global warming on the health and welfare of animals seem to be more complicated and thus are less predictable. As the epidemiology of certain gastrointestinal nematodes and liver fluke is favourably influenced by increased temperature and humidity, relations between climate change and disease dynamics should be followed closely. Under current conditions, climate change associated economic impacts are estimated to be neutral if some form of adaptation is integrated. Therefore, it is essential to establish and adopt mitigation strategies covering available tools from management, nutrition, health and plant and animal breeding to cope with the future consequences of climate change on dairy farming.