This paper looks at the possibility that the peptide bond may be more common than originally thought, leading to molecules of prebiotic interest containing heavier atoms of the second row of the periodic table. Ab initio Möller–Plesset (MP2) coupled-cluster molecular orbital methods and density functional theory have been used. A first investigation of the six-atom system [C,3H,O,N] showed that formamide, NH2[bond]CH[double bond]O, is the most stable system that can be formed. Systematic studies on this same system in which C, O and N were respectively replaced by Si, S and P were then carried out. It has been found that the peptide-like linkage is the most stable for [C,3H,S,N] and [Si,3H,O,N] where NH2[bond]CH[double bond]S and NH2[bond]SiH[double bond]O are about 10–14 kcal mol−1 more favourable than the corresponding enol tautomers and well below other isomers on the energy scale. For [C,3H,O,P], the most stable species is CH3[bond]P[double bond]O, which is found 18 kcal mol−1 below the PH2[bond]CH[double bond]O peptide analogue. By correcting the known inadequacies in the calculations with the average theoretical to experimental ratio from the benchmark molecules of the system, it is possible to obtain a best estimate of rotational constants and infrared frequencies that should be precise enough to initiate laboratory experiments and/or observations. The corrected values of B=6.0342 GHz and C=5.4921 GHz for NH2[bond]CH[double bond]S; B=9.2292 GHz and C=6.1164 GHz for NH2[bond]SiH[double bond]O; B=8.0275 GHz and C=6.4779 GHz for CH3[bond]P[double bond]O should be accurate to within a few tenths of a per cent. Theoretical infrared spectra are also provided to assist in identification of these exotic species.

Whereas the Solar System has Mars and Europa as the best candidates for finding fossil/extant life as we know it – based on complex carbon compounds and liquid water – the 263 (non-pulsar) planetary systems around other stars as known at 15 September 2008 could between them possess many more planets where life might exist. Moreover, the number of these exoplanetary systems is growing steadily, and with this growth there is an increase in the number of planets that could bear carbon–liquid water life. In this brief review the main methods by which exoplanets are being discovered are outlined, and then the discoveries that have so far been made are presented. This is followed by an account of likely future discoveries. Habitability is then discussed, and an outline presented of how a planet could be studied from afar to determine whether it is habitable, and whether it is indeed inhabited. This review is aimed at the astrobiology community, which spans many disciplines, few of which involve exoplanets. It is therefore at a basic level and concentrates on the major topics.

It is important for research into the origins of life to elucidate polyamino acid formation under prebiotic conditions. Only a limited set of amino acids has been reported to polymerize thermally. In this paper we demonstrate a novel thermal polymerization mechanism in a molten urea of alkylamino acids (i.e. glycine, alanine, β-alanine, α-aminobutyric acid, valine, norvaline, leucine and norleucine), which had been thought to be incapable of undergoing thermal polymerization. Also, aspartic acid was found to polymerize in molten urea at a lower temperature than that at which aspartic acid alone had previously been thermally polymerized. Individual oligomers produced in heating experiments on urea–amino acid mixtures were analysed using a liquid chromatograph mass spectrometer. Major products in the reaction mixture were three different types of polyamino acid derivatives: N-carbamoylpolyamino acids, polyamino acids containing a hydantoin ring at the N-terminal position and unidentified derivatives with molecular weights that were greater by 78 than those of the corresponding peptide forms. The polymerization reaction occurred by taking advantage of the high polarity of molten urea as well as its dehydrating ability. Under the presumed prebiotic conditions employed here, many types of amino acids were thus revealed to undergo thermal polymerization.

This study was motivated by the fact that some amino acids are currently identified in carbonaceous chondrites but none are yet observed in the interstellar medium. The question of the relative stability of these prebiotic compounds with respect to the other possible species of the same chemical formula is addressed by means of quantum chemical simulations based on density functional theory (DFT). A preliminary investigation of molecules with the formula C2H5O2N shows that glycine (H2NCH2COOH) is not the most stable compound that can be formed: it is ~10 kcal mol−1 higher in energy than CH3NHCOOH, which becomes the most likely candidate for a search in space. The same argument of relative stability used to explained why formamide H2N-HC=O was identified in the interstellar medium (rather than any of its isomers) provides here a rationalization of the permanent debate about the detection of glycine. A second investigation of protonated derivatives of the same series that may result from ion molecule chemistry shows that under its nitrogen protonated form (H3N+CH2COOH) glycine does become the most stable compound. This suggests that, if glycine presently detected in chondrites has an interstellar origin, it must have been synthetized as its protonated form by ion–molecule processes. A similar study was carried out on the corresponding glycine N-carboxyanhydride. The calculated rotational constants (GHz) of glycine A=10.3603; B=3.8590; C=2.9037 (Exp: 10.3418; 3.8762; 2.9123, respectively) served as the benchmark to derive the correcting factors necessary to estimate the rotational constants of the possible candidates within a few tenths of a percent. The dipole moments were determined and the values in the range 4–6 Debye obtained for the protonated species should be large enough to initiate laboratory experiments and/or observations. Theoretical infrared spectra are also provided to assist in the identification of these exotic species.

A major objective in solar system exploration is the insertion of appropriate biology-oriented experiments in future missions. We discuss various reasons for suggesting that this type of research be considered a high priority for feasibility studies and, subsequently, for technological development of appropriate melters and submersibles. Based on numerous examples, we argue in favour of the assumption that Darwin's theory is valid for the evolution of life anywhere in the universe. We have suggested how to obtain preliminary insights into the question of the distribution of life in the universe. Universal evolution of intelligent behaviour is at the end of an evolutionary pathway, in which evolution of ion channels in the membrane of microorganisms occurs in its early stages. Further, we have argued that a preliminary test of this conjecture is feasible with experiments on the Europan surface or ocean, involving evolutionary biosignatures (ion channels). This aspect of the exploration for life in the solar system should be viewed as a complement to the astronomical approach for the search of evidence of the later stages of the evolutionary pathways towards intelligent behaviour.

Despite numerous attempts, we still do not have a satisfactory definition of life. It is generally accepted that one of the essential features of life is the ability of an organism to reproduce. This implies that mules, workers ants, and other sterile individuals are not alive. To correct this apparent problem, we suggest that life should be defined in two ways. First, we define life as a phenomenon, for which the reproduction of some, but not all, individuals is essential. Second, we define life as a set of characteristics of an individual organism, among which reproduction is not essential. We explore Aristotle's classifications of things that exist, in which he placed individual living beings as primary substances, above their species and genera, which are considered secondary substances. The definition of life as a phenomenon needs to link life to its origins. Life presumably emerged from abiotic matter via chemical evolution. We have examined Aristotle's concept of change in which potentiality goes to actuality, and its variant, Kauffman's concept of ‘adjacent possible’, for their possible application in prebiotic chemical evolution. We have found that these principles are somewhat useful in the back-engineering process, but that they have very little predictive value. We have also considered whether viruses should be considered alive, and have pointed to the need for astrobiology to include viruses in its studies.

Microbes, particularly Archaea, are well-known for their superb adaptation to extreme environments. However, amazing adaptations to extreme stresses do not only occur in microbes, but also in many multicellular organisms. Examples include tardigrades and their capability to survive freezing to near absolute zero, the Pompeii worm withstanding temperatures of up to 105°C, the Crucian carp remaining active in anoxic conditions for several months, and resurrection plants, which can survive near-complete desiccation. Here, we review some of the cryptobiotic strategies and adaptations exhibited in multicellular organisms, and point out their relevance to astrobiology.

Cells from the three domains of life produce extracellular membrane vesicles (EMVs), suggesting that EMV production is an important aspect of cellular physiology. EMVs have been implicated in many aspects of cellular life in all domains, including stress response, toxicity against competing strains, pathogenicity, detoxification and resistance against viral attack. These EMVs represent an important mode of inter-cellular communication by serving as vehicles for transfer of DNA, RNA, proteins and lipids between cells. Here, we review recent progress in the understanding of EMV biology and their various roles. We focus on the role of membrane vesicles in early cellular evolution and how they would have helped shape the nature of the last universal common ancestor. A membrane-protected micro-environment would have been a key to the survival of spontaneous molecular systems and efficient metabolic reactions. Interestingly, the morphology of EMVs is strongly reminiscent of the morphology of some virions. It is thus tempting to make a link between the origin of the first protocell via the formation of vesicles and the origin of viruses.

One of the future challenges to produce food in a Mars environment will be the optimization of resources through the potential use of the Martian substratum for growing crops as a part of bioregenerative food systems. In vitro plantlets from 65 potato genotypes were rooted in peat-pellets substratum and transplanted in pots filled with Mars-like soil from La Joya desert in Southern Peru. The Mars-like soil was characterized by extreme salinity (an electric conductivity of 19.3 and 52.6 dS m−1 under 1 : 1 and saturation extract of the soil solution, respectively) and plants grown in it were under sub-optimum physiological status indicated by average maximum stomatal conductance <50 mmol H2O m−2 s−1 even after irrigation. 40% of the genotypes survived and yielded (0.3–5.2 g tuber plant−1) where CIP.397099.4, CIP.396311.1 and CIP.390478.9 were targeted as promising materials with 9.3, 8.9 and 5.8% of fresh tuber yield in relation to the control conditions. A combination of appropriate genotypes and soil management will be crucial to withstand extreme salinity, a problem also important in agriculture on Earth that requires more detailed follow-up studies.

Several space agencies and exploration stakeholders have a strong interest in obtaining information on technical and human aspects to prepare for future extra-terrestrial planetary exploration. In this context, the EuroGeoMars campaign, organized with support from the International Lunar Exploration Working Group (ILEWG), the European Space Agency (ESA), the National Aeronautics and Space Administration (NASA) Ames Research Center and partner institutes, was conducted by the crews 76 and 77 in February 2009 in The Mars Society's ‘Mars Desert Research Station’ (MDRS) in Utah.

The EuroGeoMars encompasses two groups of experiments: (1) a series of field science experiments that can be conducted from an extra-terrestrial planetary surface in geology, biology, astronomy/astrophysics and the necessary technology and networks to support these field investigations; (2) a series of human crew-related investigations on crew time organization in a planetary habitat, on the different functions and interfaces of this habitat, and on man–machine interfaces of science and technical equipment.

This paper recalls the objective of the EuroGeoMars project and presents the MDRS and its habitat layout. Social and operational aspects during simulations are described. Technical and operational aspects of biology investigations in the field and in the habitat laboratory are discussed in detail with the focus point set on the polymerase chain reaction (PCR)-based detection of microbial DNA in soil samples.

In this paper, a first study of the atmospheric entry of carbonate micrometeoroids, in an astrobiological perspective, is performed. Therefore an entry model, which includes two-dimensional dynamics, non-isothermal atmosphere, ablation and radiation losses, is build and benchmarked to literature data for silicate micrometeoroids. A thermal decomposition model of initially pure magnesium carbonate is proposed, and it includes thermal energy, mass loss and the effect of changing composition as the carbonate grain is gradually converted into oxide. Several scenarios are obtained by changing the initial speed, entry angle and grain diameter, producing a systematic comparison of silicate and carbonate grain. The results of the composite model show that the thermal behaviour of magnesium carbonate is markedly different from that of the corresponding silicate, much lower equilibration temperatures being reached in the first stages of the entry. At the same time, the model shows that the limit of a thermal protection scenario, based on magnesium carbonate, is the very high decomposition speed even at moderate temperatures, which results in the total loss of carbon already at about 100 km altitude. The present results show that, although decomposition and associated cooling are important effects in the entry process of carbonate grains, the specific scenario of pure MgCO3 micrograin does not allow complex organic matter delivery to the lower atmosphere. This suggests us to consider less volatile carbonates for further studies.

The widespread independent evolution of analogous bioluminescent systems is one of the most impressive and diverse examples of convergent evolution on earth. There are roughly 30 extant bioluminescent systems that have evolved independently on Earth, with each system likely having unique enzymes responsible for catalysing the bioluminescent reaction. Bioluminescence is a chemical reaction involving a luciferin molecule and a luciferase or photoprotein that results in the emission of light. Some independent systems utilize the same luciferin, such as the use of tetrapyrrolic compounds by krill and dinoflagellates, and the wide use of coelenterazine by marine organisms, while the enzymes involved are unique. One common thread among all the different bioluminescent systems is the requirement of molecular oxygen. Bioluminescence is found in most forms of life, especially marine organisms.

Bioluminescence in known to benefit the organism by: attraction, repulsion, communication, camouflage, and illumination. The marine ecosystem is significantly affected by bioluminescence, the only light found in the pelagic zone and below is from bioluminescent organisms.

Transgenic bioluminescent organisms have revolutionized molecular research, medicine and the biotechnology industry. The use of bioluminescence in studying molecular pathways and disease allows for non-invasive and real-time analysis. Bioluminescence-based assays have been developed for several analytes by coupling luminescence to many enzyme-catalysed reactions.

Liquid water on Mars might be created by deliquescence of hygroscopic salts or by permafrost melts, both potentially forming saturated brines. Freezing point depression allows these heavy brines to remain liquid in the near-surface environment for extended periods, perhaps as eutectic solutions, at the lowest temperatures and highest salt concentrations where ices and precipitates do not form. Perchlorate and chlorate salts and iron sulphate form brines with low eutectic temperatures and may persist under Mars near-surface conditions, but are chemically harsh at high concentrations and were expected to be incompatible with life, while brines of common sulphate salts on Mars may be more suitable for microbial growth. Microbial growth in saturated brines also may be relevant beyond Mars, to the oceans of Ceres, Enceladus, Europa and Pluto. We have previously shown strong growth of salinotolerant bacteria in media containing 2M MgSO4 heptahydrate (~50% w/v) at 25°C. Here we extend those observations to bacterial isolates from Basque Lake, BC and Hot Lake, WA, that grow well in saturated MgSO4 medium (67%) at 25°C and in 50% MgSO4 medium at 4°C (56% would be saturated). Psychrotolerant, salinotolerant microbes isolated from Basque Lake soils included Halomonas and Marinococcus, which were identified by 16S rRNA gene sequencing and characterized phenetically. Eutectic liquid medium constituted by 43% MgSO4 at −4°C supported copious growth of these psychrotolerant Halomonas isolates, among others. Bacterial isolates also grew well at the eutectic for K chlorate (3% at −3°C). Survival and growth in eutectic solutions increases the possibility that microbes contaminating spacecraft pose a contamination risk to Mars. The cold brines of sulphate and (per)chlorate salts that may form at times on Mars through deliquescence or permafrost melt have now been demonstrated to be suitable microbial habitats, should appropriate nutrients be available and dormant cells become vegetative.

The notion that ultraviolet (UV) fluxes, and thus biologically weighted irradiances, were higher on Archaean Earth than on present-day Earth has been a pervasive influence on thinking concerning the nature of early Earth. It directly influences calculations concerning protection strategies that may or may not have been required by early life. Our knowledge of the Earth's changing UV radiation climate over time depends upon our knowledge of a diversity of factors, the magnitudes of which are uncertain. Here these uncertainties are explored. During the Archaean Era, calculations of the surface photobiological environment span a three order of magnitude difference in DNA-damage weighted irradiances with consequences for our assumptions concerning the environment for exposed surface life and the role of UV radiation as a mutagen. These differences are primarily caused by uncertainties in the concentrations of trace gases and the partial pressures of carbon dioxide and nitrogen that affect scattering in the atmosphere. To a lesser extent, the luminosity of the Sun in the UV region is also a factor. During the Proterozoic and Phanerozoic, when we know that an ozone column existed, these uncertainties drop to two orders of magnitude and are primarily caused by poor knowledge about the frequency and atmospheric effects of potentially ozone-depleting agents such as volcanism, impact events and supernovae explosions as well as the effects of global temperatures on ozone concentrations and thus surface UV irradiance. Changes in other atmospheric constituents during this time have less of an effect on photobiological consequences, which include a Palaeozoic oxygen pulse. Understanding the cause of photobiological uncertainties and their consequences constitutes a current challenge for atmospheric chemists and photobiologists.

The Kepler data show that habitable small planets orbiting Red Dwarf stars (RDs) are abundant, and hence might be promising targets to look at for biomarkers and life. Planets orbiting within the habitable zone of RDs are close enough to be tidally locked. Some recent works have cast doubt on the ability of planets orbiting RDs to support life. In contrast, it is shown that temperatures suitable for liquid water and even for organic molecules may exist on tidally locked planets (TLPs) of RDs for a wide range of atmospheres. We chart the surface temperature distribution as a function of the irradiation, greenhouse factor and heat circulation. The habitability boundaries and their dependence on the atmospheric properties are derived. By extending our previous analyses of TLPs, we find that tidally locked as well as synchronous (not completely locked) planets of RDs and K-type stars may support life, for a wider range of orbital distance and atmospheric conditions than previously thought. In particular, it is argued that life clement environments may be possible on tidally locked and synchronously orbiting planets of RDs and K-type stars, with conditions supporting oxygenic photosynthesis, which on Earth was a key to complex life. Different climate projections and the biological significance of tidal locking on putative complex life are reviewed. We show that when the effect of continuous radiation is taken into account, the photo-synthetically active radiation available on TLPs, even of RDs, could produce a high-potential plant productivity, in analogy to mid-summer growth at high latitudes on Earth. Awaiting the findings of TESS and JWST, we discuss the implications of the above arguments to the detection of biomarkers such as liquid water and oxygen, as well as to the abundance of biotic planets and life.

The FT-Raman spectra of an Antarctic endolith from the LTER site at Lake Hoare are reported. The specimen provides an unusual occurrence of endolithic colonization of an igneous rock substratum, which analyses as microcline feldspar. The presence of aragonite in the red biological stratum and calcite in a fissure of the rock which has not been subjected to colonization can be attributed to the penetration of calcareous deposits from shallow ground water in an earlier environment in the Dry Valleys. The green biological layer is composed of chlorophyll and β-carotene. Comparison with previous Raman spectroscopic work on endoliths in sedimentary Beacon sandstone is effected.

Microgravity has a profound impact on the physiology of pathogenic microbes; however, its effects on mutualistic microbes are relatively unknown. To examine the effects of microgravity on those beneficial microbes that associate with animal tissues, we used the symbiosis between the bobtail squid Euprymna scolopes and a motile, luminescent bacterium, Vibrio fischeri as a model system. Specifically, we examined the role of Hfq, an RNA-binding protein known to be an important global regulator under space flight conditions, in the squid–vibrio symbiosis under simulated microgravity. To mimic a reduced gravity environment, the symbiotic partners were co-incubated in high-aspect-ratio rotating wall vessel bioreactors and examined at various stages of development. Results indicated that under simulated microgravity, hfq expression was down-regulated in V. fischeri. A mutant strain defective in hfq showed no colonization phenotype, indicating that Hfq was not required to initiate the symbiosis with the host squid. However, the hfq mutant showed attenuated levels of apoptotic cell death, a key symbiosis phenotype, within the host light organ suggesting that Hfq does contribute to normal light organ morphogenesis. Results also indicated that simulated microgravity conditions accelerated the onset of cell death in wild-type cells but not in the hfq mutant strains. These data suggest that Hfq plays an important role in the mutualism between V. fischeri and its animal host and that its expression can be negatively impacted by simulated microgravity conditions.

The adsorption of amino acids onto minerals in prebiotic seas may have played an important role for their protection against hydrolysis and formation of polymers. In this study, we show that the adsorption of the prebiotic amino acids, glycine (Gly), α-alanine (α-Ala) and β-alanine (β-Ala), onto Na+-montmorillonite was dependent on salinity and pH. Specifically, adsorption decreased from 58.3–88.8 to 0–48.9% when salinity was increased from 10 to 100–150% of modern seawater. This result suggests reduced amino acid adsorption onto minerals in prebiotic seas, which may have been even more saline than the tested conditions. Amino acids also formed complexes with metals in seawater, affecting metal adsorption onto Na+-montmorillonite, and amino acid adsorption was enhanced when added before Na+-montmorillonite was exposed to high saline solutions. Also, the dissolution of Na+-montmorillonite was reduced in the presence of amino acids, with β-Ala being the most effective. Thus, prebiotic chemistry experiments should also consider the integrity of minerals in addition to their adsorption capacity.

Prebiotic chemical evolution on the early Earth may have been driven in part by fluctuating environments, for example wet‒dry and temperature cycling in volcanic rock pools. Here, we describe the setup, operating principle and test applications of a newly developed ‘wet‒dry apparatus’ (WDA) designed to simulate such fluctuating environments. The WDA allows adjusting the duration of the cycles, the temperature during the wet and dry phases and the organic and mineral components, which are all key parameters in wet–dry simulations. The WDA's most important features, however, are (i) that it is automated, which means that long-time experiments are possible without the need for an operator and (ii) that the virtual absence of free oxygen in the early Earth's atmosphere at ground level can be simulated. Rigorously oxygen-free conditions were achieved by passing 99.999% nitrogen gas through two alkaline pyrogallol solutions in series, prior to entering the WDA. We used three chemical systems to test the WDA: (i) the amino acid glycine in the presence and absence of clay minerals, (ii) linoleic acid (an oxygen-sensitive amphiphile) with and without the mineral olivine, and (iii) alkaline pyrogallol solution. We observed that clay minerals greatly accelerated the decomposition of glycine under wet‒dry conditions. Glycine peptides were formed as minor products. In the course of the glycine experiments, we developed a reliable gas chromatographic method to quantify the cyclic dipeptide 2,5-diketopiperazine. The decomposition of linoleic acid in wet‒dry cycles was promoted by both air and olivine. And finally, the extremely oxygen-sensitive pyrogallol solution was used as a colour indicator for residual oxygen in the WDA. The simulation facility in our laboratory currently consists of eight identical WDAs and a surrounding infrastructure. It can be made available to others who wish to perform cyclic wet–dry experiments.

A key open question in the study of life is the origin of biomolecular homochirality: almost every life-form on Earth has exclusively levorotary amino acids and dextrorotary sugars. Will the same handedness be preferred if life is found elsewhere? We review some of the pertinent literature and discuss recent results suggesting that life's homochirality resulted from sequential chiral symmetry breaking triggered by environmental events. In one scenario, autocatalytic prebiotic reactions undergo stochastic fluctuations due to environmental disturbances, in a mechanism reminiscent of evolutionary punctuated equilibrium: short-lived destructive events may lead to long-term enantiomeric excess. In another, chiral-selective polymerization reaction rates influenced by environmental effects lead to substantial chiral excess even in the absence of autocatalysis. Applying these arguments to other potentially life-bearing platforms has implications to the search for extraterrestrial life: we predict that a statistically representative sampling of extraterrestrial stereochemistry will be racemic (chirally neutral) on average.