Capture-mark-recapture (CMR) repeated at intervals is a commonly used method of population estimation of mammals. Most guidelines for the use of wild mammals recommend adequate measures to ensure a captured animal has food and water available, as needed, until it is released. Small mammals are often highlighted as needing special care, but recommendations are either less clear or absent for medium- and large-sized mammals. We therefore examined the short-term welfare implications of CMR trapping of medium-sized mammals, using the marsupial, brushtail possum (Trichosurus vulpecula) as a case study. Possums were caught in cage traps baited with circa 30 g of food and set for three consecutive days at monthly intervals. Timing devices on the traps measured when traps were sprung. Possums were confined in traps for, on average, 89% of each night they were trapped, plus a further 2-6 h between sunrise and the actual time of release from the traps. They lost 3-8% of their bodyweight on average, depending on the number of captures in a trapping session. A recently developed framework for humaneness assessment, based on five welfare domains, gave an overall welfare impact of mild-moderate for cage trapping of possums. The short-term solutions to these welfare impacts would be, at a minimum, to provide trapped possums with adequate additional food and water, and minimise their time spent in the traps. Guidelines for the use of wild animals in research and management could also be more prescriptive regarding the provision of food and water in studies of medium-sized mammals that involve repeated capture.

Tourism can be a powerful tool for wildlife conservation if well controlled and responsibly managed. Apex predators constitute particularly attractive subjects for tourism, but simultaneously they may generate conflict with local communities. Harpy Eagles Harpia harpyja are the largest eagle species and are highly sought-after by ecotourists. The last stronghold of the Harpy Eagle is the Amazon Forest, which is being deforested for cattle ranching. We tested methods for developing Harpy Eagle ecotourism as a potential tool to harmonize these issues. Using camera traps, we collected data on timing of Harpy Eagle visits to their nests, as well as on probabilities of viewing an eagle. Harpy Eagles can only be seen predictably during the first 12 of the 30–36 month nest cycle. In nests with nestlings (up to 5–7 months), adults are visible on a daily basis, and this period lasts 16.6% of the nesting cycle, demanding a minimum of 13, 17, and 26 nests to have at least one nest with a nestling on 90%, 95% and 99% of the days. After this 5–7 month window, we found that two and 4.16 days spent at nests afforded high probabilities of sighting a fledgling or adult eagle, respectively. Harpy Eagles were mainly active at the beginning and the end of the day. Activity core lasted 6.5 decimal hours for adults, peaking at 10h00, and 7.45 decimal hours for fledged eagles, peaking at 15h00. Our results demonstrate that Harpy Eagles fit several criteria for a viable wildlife attraction: predictable in activity and location, viewable, and diurnal, even though at the same time they are considered a rarity. In a broader perspective, Harpy Eagle tourism shows every indication of being a significant tool for more robust rainforest conservation.

Encounter rates of carnivores with prey are dependent on spatial and temporal overlap, and are often highest with their preferred prey. The Critically Endangered Sumatran tiger Panthera tigris sumatrae is dependent on prey populations, but little is known about its prey preferences. We collected camera-trap data for 7 years (2010–2016) in Bukit Barisan Selatan National Park, Sumatra, to investigate spatial and temporal overlap of tigers with potential prey species. We also developed a novel method to predict predator–prey encounter rates and potential prey preferences from camera-trap data. We documented at least 10 individual tigers, with an overall detection rate of 0.24 detections/100 trap nights. Tigers exhibited a diurnal activity pattern and had highest temporal overlap with wild boar Sus scrofa and pig-tailed macaques Macaca nemestrina, but highest spatial overlap with wild boar and sambar deer Rusa unicolor. We created a spatial and temporal composite score and three additional composite scores with adjustments for the spatial overlap and preferred prey mass. Wild boars ranked highest for all composite scores, followed by sambar deer, and both are known as preferred tiger prey in other areas. Spatial and temporal overlaps are often considered as separate indices, but a composite score may facilitate better predictions of encounter rates and potential prey preferences. Our findings suggest that prey management efforts in this area should focus on wild boar and sambar deer, to ensure a robust prey base for this Critically Endangered tiger population.

Parts of southern Belize are designated as a corridor for the jaguar Panthera onca but the Maya region remains understudied. We therefore studied jaguar habitat use, activity patterns, and interactions with people in Blue Creek, a Maya village in a human-dominated tropical landscape in southern Belize. We used camera traps to detect jaguar presence, and interviews to assess local people's attitudes to and perceptions of jaguars. We recorded 28 independent photographic events during 1,200 camera-trap nights (i.e. a relative abundance index of 2.3 jaguars per 100 trap days). Seven individual jaguars were identified. Jaguars preferred lowland broad-leaf tropical forest and were detected more often during daylight, in contrast to findings from previous studies. Attitudes towards jaguars were largely positive: 88% of respondents (n = 48) did not fear jaguars living around the village, and 81% understood the positive effect that jaguars have on the ecosystem. Although 92% of respondents reported seeing a jaguar within the previous 2 years, attacks on livestock in the village were rare, with only two occurrences in the previous 3 years. Ecotourism has grown rapidly in Belize in recent years, and Blue Creek is home to several natural tourist attractions and an eco-lodge that brings tourists, school groups, and researchers to the village. Ecotourism has provided an economic incentive for village investment in conservation, and 94% of respondents stated that preservation of wildlife, including jaguars, was beneficial to their well-being.

Gnathiid isopods are one of the most common fish ectoparasites, and are found in both temperate and tropical oceans. On coral reefs, gnathiids are most active at dusk and dawn, and contribute significantly to trophic dynamics, as they are a prey resource for cleaner fish and parasitize numerous fishes. Gnathiids also inhabit temperate intertidal waters, but their activity patterns and contribution to intertidal trophic dynamics remain unstudied. To provide the first ecological data on temperate intertidal gnathiid activity patterns, 172 gnathiid-free Clinus superciliosus were set in an intertidal system in Tsitsikamma National Park, South Africa, during early morning, morning, afternoon, early evening, and evening, high and low tide, and within the inter- and infra-tidal zone to examine gnathiid infestation levels. After exposure, gnathiids from each fish were identified to the species level, counted, and their developmental stage was recorded. All gnathiids were identified as Gnathiia africana. On average, 1 ± 5SD gnathiids were collected from each fish, and the majority of gnathiids collected were stage 1. Significantly more gnathiids were collected during morning and afternoon compared with all other time periods. The number of gnathiids collected was not influenced by the fish's exposure to high or low tide, or placement within the tide zone. Although G. africana is free from cleaner fish predation because cleaner fish do not reside in temperate intertidal habitat, G. africana abundance is surprisingly small. Future studies should examine what regulates G. africana population size and the role they play in temperate intertidal food webs.

Cassowaries are important seed dispersers in tropical rainforests of New Guinea, but little is known about their population ecology or their responses to human disturbance. We used camera traps to measure the occurrence, local abundance, and activity patterns of northern cassowaries Casuarius unappendiculatus in lowland forests near Nimbokrang, Papua, and dwarf cassowaries Casuarius bennetti in the Arfak Mountains, West Papua. Our goals were to assess human impacts on cassowaries at multiple spatial scales and to measure their activity patterns over an elevational divide. At fine spatial scales local abundance of cassowaries was strongly reduced in areas frequented by humans. At larger spatial scales the distance to the nearest village or drivable road did not affect local abundance but altered the stage structure of the individuals detected, with a higher proportion of juveniles relative to adults. Local abundance of cassowaries was unrelated to site usage by introduced pigs. Both populations studied were strongly diurnal and their activity patterns were not significantly different. Efforts to control hunting remain critical to sustaining cassowaries and the seed dispersal services they provide.

Long-term tagging studies, particularly those that target life stages away from nesting beaches can provide important insights in key life history traits, which are essential for the effective management of endangered species. The coast of Bahia hosts important green turtle foraging areas, but information on demography, spatial use and foraging ecology in this region is lacking. Here, we (1) examined the size-class structure of green turtles in Bahia, (2) compared the size distribution from Bahia to other foraging aggregations in Brazil, and (3) studied the somatic growth dynamics. Additionally, we investigated the (4) diet, (5) habitat use and (6) activity patterns of green turtles along shallow reefs in Bahia. From 2009 to 2013, 322 green turtles were captured and 44 were recaptured between 7 and 1218 days after initial tagging. Curved carapace length varied from 32.9 to 122.5 cm. Mean annual growth rate was 3.03 ± 1.18 cm year−1. The diet of the turtles was mainly composed of red algae of the family Gelidiaceae, Gelidiellaceae and Cystocloniaceae. There was a positive relationship between the abundance of red algae and the number of turtle sightings, with a significant increase in foraging activity during late afternoon. This study highlights the importance of this area as a mixed foraging aggregation of juvenile and adult green turtles, and reveals that foraging grounds for this species in Brazil exhibit southern immature-dominated assemblages and northern mixed aggregations. Areas with high aggregation of green turtles comprising individuals from different life stages must be targeted for conservation management.

We assessed the differences and similarities in diel activities among five phytophagous bat species at two habitats over two seasons within the Sierra del Rosario Biosphere Reserve in Cuba. We characterized temporal patterns of activity and overlap of temporal activity for frugivore and nectarivore bat species (Artibeus jamaicensis, Monophyllus redmani, Phyllonycteris poeyi, Phyllops falcatus and Brachyphylla nana) that occur in tropical evergreen forest sites with distinct altitude and vegetation structure during wet and dry seasons. Capture frequencies using mist-nets of 1180 capture events were the empirical basis for analyses. For each species we compared activity patterns between habitats, between seasons, between males and females, as well as between reproductive and non-reproductive females. We also assessed temporal overlap among each possible pair of species at each habitat and used Monte Carlo simulations to evaluate assemblage-wide temporal niche overlap using a new algorithm, termed Rosario, designed specifically for temporal data. The two habitats had the same species composition and bat diel rhythms tended to be consistent across habitats, seasons and sexes for most bat species. In general bat species pairwise temporal niche overlap was high, and the ensemble-wide temporal overlap was consistently high across habitats and seasons indicating a common constraint for bat activities. Activity peaks of most bat species coincided at 4–5 h after sunset, this being in sharp contrast to other Neotropical bat assemblages at continental sites where activity peaks usually overlap within the first 2 h after sunset. This strong disparity in timing of activity peaks between continental and insular bat assemblages can provide the framework for the generation of hypotheses that explain the potential role of time as a mediator of ecological interactions in bat assemblages.

Despite the potential importance of temporal separation for the coexistence of competing species, no study has found significant segregation at the circadian level between jaguar (Panthera onca) and puma (Puma concolor) in sympatry. Using data from camera trap surveys (wet and dry seasons), we have evaluated the activity patterns of both species and their potential prey at four areas in the dry forest of the Bolivian Chaco. We tested if temporal separation existed between these two species, and if their activity was related to that of a particular prey. At most sites, activity patterns of jaguar and puma did not vary significantly between seasons, except for puma at one site. There were no differences between sexes for any cat species at any site. At three sites we found statistically significant differences in the activity patterns of jaguar and puma, as they showed a clear temporal segregation. None of them followed the activity patterns of any particular prey species across sites. The latter suggests that segregation is influenced by avoidance behaviour between the two felid species. Therefore, temporal separation may be an important behavioural factor promoting the coexistence of jaguar and puma in some areas of this dry forest.

Temporal niche partitioning can be a viable mechanism for coexistence, but has received less attention than other niche axes. We characterized and compared patterns of activity, and overlap of temporal activity among the five common rodent species from a tropical semideciduous forest (TSF) and between the two common rodent species from cloud forest (CF) at El Cielo Biosphere Reserve in Mexico. Capture frequencies over 2-h intervals, obtained via live trapping (6850 trap-nights) in chosen months over 3 y formed the empirical basis for analyses. Trap transects were set from 19h00 to 07h00 and checked every 2 h. Analyses of 484 captures evinced two distinct assemblages. The TSF assemblage was diverse and with non-random temporal niche segregation, whereas the CF assemblage was depauperate with its two dominant species evincing the same activity pattern. Predator avoidance between open- and closed-microhabitat species, as well as niche complementarity may explain temporal segregation at TSF. This is the first documentation of assemblage-wide non-random temporal segregation of neotropical rodents. Time of activity may be a largely under-appreciated mechanism in other species-rich tropical rodent assemblages as well as in other species-rich biotas.

We investigated the daily activity patterns of four species of small mammals in an area of cerrado habitat in central Brazil. We checked live traps at 3-hour intervals during the night. Bolomys lasiurus and Calomjis tenet (Rodentia, Muridae), two potential competitors, differed significantly in their daily activity patterns. Bolomys lasiurus had peaks during the twilight, whereas C. tener had a more constant activity through the night, with a peak between 2200 and 0100 h. Thalpomys cerradensis (Rodentia, Muridae) was more active immediately after sunset and in the last three hours before sunrise. Thylamys velutinus (Marsupialia, Marmosidae) was strictly nocturnal with greater activity early in the night. Other factors, such as predation pressure or diet, may be important in determining the activity patterns observed in this study.

An animal's fitness is in part based on its ability to manage the inherent risks (foraging costs, predation, exposure to disease) with the benefits (resource gain, access to mates, social interactions) of activity (Abrams 1991, Altizer et al. 2003, Lima & Bednekoff 1999, Rubenstein & Hohmann 1989, Wikelski et al. 2001). Thus, understanding an animal's pattern of activity is key to understanding behavioural and ecological processes. However, while numerous laboratory methodologies are available to continuously quantify activity over long periods of time, logistical difficulties have greatly hindered activity studies of animals in the field (DeCoursey 1990).

We used remote cameras to obtain information on an elusive species and to examine the effects of different camera trapping methodologies on abundance estimates. We determined activity pattern, trail use, trap success, and density of ocelot Leopardus pardalis in seven camera-trap surveys across two habitat types in western Belize: tropical broad-leaf rainforest and tropical pine forest. Ocelots in the rainforest were active mostly at night, in particular immediately after sunset, and they travelled on low-use roads (especially in the wet season) and high-use roads (especially in the dry season) more than established and newly cut trails. Trap success was relatively high in the rainforest (2.11–6.20 captures per 100 trap nights) and low in the pine forest (0.13–0.15 captures per 100 trap nights). Camera trapping combined with mark-recapture statistics gave densities of 25.82–25.88 per 100 km2 in the broad-leaf versus 2.31–3.80 per 100 km2 in the pine forest. Density estimates increased when animals repeatedly captured at the same camera (zero-distance moved animals) were included in the buffer size analysis. Density estimates were significantly negatively correlated with distance between cameras. We provide information on ocelot population status from an unstudied portion of its range and advise that camera trap methodologies be standardized to permit comparisons across sites.

Patterns of association in many ungulate species vary throughout the year, with males periodically segregating from females. Sexual segregation can occur if males and females use different habitats (habitat segregation), occupy exclusive ranges (spatial segregation) or occur in separate social groups (social segregation). Previous studies on social segregation in ungulates have focused mostly on non-reproductive periods and species in temperate systems with short mating seasons. This study examined social segregation in African buffalo Syncerus caffer at Hluhluwe-iMfolozi Park, South Africa, during their 6-month mating season. During this period, mature male buffalo alternated between joining mixed-sex herds which comprise females and young, and small all-male groups. Activity patterns of male buffalo in both group types were examined to determine if differences in time allocation or activity asynchrony could explain the observed segregation. Mature males foraged for less time than both adult females and younger males when they were with mixed herds. Mature male buffalo differed in how their active time was apportioned to foraging and reproductive activities between the two group types. Females maintained group cohesion despite only low synchrony in activity, therefore segregation of male buffalo could not be explained by the activity budget hypothesis. For males in mixed-sex herds, reproductive activities were apparently at the expense of foraging time. The high time and energy costs of reproductive activities were probably responsible for the periodic separation of male buffalo from mixed herds during the extended mating period.

We studied activity patterns and habitat use by insectivorous bats in Comoé National Park, Ivory Coast. Bat foraging activity was quantified along five transects representing three different habitat types using acoustic monitoring and captures with mist nets and harp traps. Aerial insect abundance was assessed using a light trap; in addition shrub and tree arthropods were sampled. Bat activity was significantly and positively related to insect availability and ambient temperature, whereas increased visibility of the moon had a negative influence on flight activity. Together, these factors best explained both total bat activity and activity of bats hunting in open space and edge habitats. The interaction between temperature and light intensity was the best predictor of activity by species foraging in obstacle-rich forest habitats, however, the regression model had a low predictive value. Overall, a large proportion (c. 50%) of the variation in bat activity appeared to be a consequence of transect- and/or habitat-specific influences. We found a significant non-linear relationship between the activity of QCF (quasi-constant frequency) and FM–QCF (frequency modulated – quasi-constant frequency) bats and the phase of the moon, with lowest levels of activity occurring near full moon. We interpret this lunar-phobic behaviour as a reflection of a higher predation risk during moonlit periods. For FM (steep frequency modulated) and CF (constant frequency) bats, no significant correlation was found, although there was a trend suggesting that these bats at least were not negatively affected by bright moonlight. Foraging activity of bats was positively correlated with the abundance of atympanate moths; however, no such correlation was found for tympanate moths.

The seasonal activity of the common dormouse Muscardinus avellanarius was studied in three different habitat types of central Italy: a deciduous beech wood dominated by Fagus sylvatica (Cimini Mountains), and a deciduous oak woodland with Quercus cerris and Q. pubescens and an evergreen wood dominated by holm oak Q. ilex, both along the central Tyrrhenic coast. In each site, 50 nest-boxes were fixed to trees and were monitored monthly for 2 years (May 1998–April 2000). In the beech wood site, the species showed an annual biological cycle similar to that described for populations of central and northern Europe: dormancy in winter, from the first 10 days of November to the end of December; end of hibernation in the first half of April; reproduction between May and July. On the contrary, in the two coastal sites, nest-boxes were occupied from October to June, and the breeding period was in autumn, showing that a winter dormancy phase is absent, probably owing to the mild winter. On the other hand, no dormice or new nests were observed in nest-boxes in summer suggesting that a dormancy phase occurred in summer, probably owing to dry climatic conditions. Two patterns of biological cycle therefore emerged from the results: a temperate pattern in beech forest with winter dormancy and spring reproduction, and a Mediterranean pattern in coastal habitats with autumnal reproduction, winter activity and summer dormancy.

Large-scale anthropogenic habitat degradation is taking place in the Negev Desert and such degradation is considered to be the primary cause of population decline in many bat species. A study of bat community structure in the central Negev Desert Highlands was undertaken to examine habitat associations, activity patterns and the distribution of bats in relation to landscape structure. During 1999 and 2000, mist-nets and bat detectors were used to capture bats and to monitor their presence in natural and artificial sites. In total, 12 species of insectivorous bats were found. Communities of insectivorous bats were divided into three guilds based on foraging space: open space foragers, background-cluttered space foragers, and highly cluttered space foragers. Bats of the background-cluttered space guild foraged over a variety of habitats while bats from the other guilds were more restricted with regard to their foraging spaces. In both years, season had a significant effect on bat activity. Despite there being significantly more bat activity in artificial sites than in natural sites, bat species richness was least in the artificial sites. For most species of desert-dwelling bats, areas that are typified by dense vegetation cover and have a perennial water source are of primary importance.

Eight aardvarks Orycteropus afer were fitted with radio-transmitters at Tussen die Riviere Nature Reserve between June 1996 and December 1997. Two became habituated and could be approached to a distance of 1 m. Activity patterns, home ranges and burrow use were investigated using telemetry and direct observations. In winter, aardvarks emerged above ground earlier, returned to burrows earlier and were active for shorter periods than in summer. They were nocturnal except occasionally in winter when some individuals foraged above ground before sunset. Home ranges varied between 133 ha and 302 ha and range overlap occurred within and between both sexes. Densities were c. eight animals per 1000 ha. Aardvarks used steep slopes (>15°) less than would have been expected according to availability. Average lengths of consecutive burrow use for three aardvarks were 4.9, 6.9 and 8.6 days, with some burrows being abandoned after only 1 day and one burrow being used for 38 days.